45 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Automatic micro-tubules cut detector. | 2K | |
| A lightweight Python tool for real-time ratiometric fluorescence analysis | 1K | |
| Omnipose: a high-precision solution for morphology-independent cell segmentation | 1K | |
| Local Mode for the Quilt Catalog | 1K | |
| DMC-BrainMap is an end-to-end tool for multi-feature brain mapping across specie... | 1K | |
| A plugin that enables 3D image segmentation provided by Allen Institute for Cell... | 1K | |
| Explore and annotate your multi-channel large TIF files with this user-friendly ... | 991 | |
| Napari user interface with connection to OMERO. | 950 | |
| This is a in-house package to deal with lazy tiled image tile loading to save RA... | 947 | |
| 830 | ||
| A plugin that enables organelle segmentation and analysis | 776 | |
| Brainways | 774 | |
| Brainways | 744 | |
| Cytoplasm parameterization using spherical harmonics | 728 | |
| CNN framework | 708 | |
| Python algorithm to pack 3D models | 610 | |
| A continuation of napari-psf-analysis for CFIM | 563 | |
| Container class for storing data from spatial feature experiments | 543 | |
| RABiTPy: A package to track the movement of a subject in a video file. | 426 | |
| Scripts for ML structure segmentation. | 386 | |
| A package to add a scale bar to microscopy images | 341 | |
| A plugin that enables organelle segmentation, forked from tools from Allen Insti... | 331 | |
| A package to analyze particle flow | 303 | |
| A tool for bioimage data validation and archival | 242 | |
| Comprehensive spatial transcriptomics analysis library with advanced segmentatio... | 237 | |
| BaSiCPy illumination correction for napari | 212 | |
| A Czi reader plugin for napari | 198 | |
| Cell segmentation and windowing | 195 | |
| Omero Data Import Export Queue | 169 | |
| Spatial Process & Relationship Modeling | 163 | |
| Locate bacteria in CLSM obtained infected bone tissue images | 149 | |
| Interactive batch annotation tool for microscopy datasets with tiled grid visual... | 126 | |
| A package to add a scale bar to microscopy images | 106 | |
| A pipeline for stuff #TODO: Get knowledge to write a proper description Pitcount | 87 | |
| Core library for neutrophils classification with unified 2D/3D model interface | 85 | |
| Python toolkit for analyzing temporal dynamics of mitochondrial networks | 73 | |
| ArtifactDB representation for SFE. | 67 | |
| Python Condensate Analysis Toolbox (PyCAT) for bio-image analysis, especially bi... | 63 | |
| A simple plugin to help with analyzing cells in napari | 60 | |
| Python library and runners for tglow pipeline, interfacing with plate/row/col/fi... | 59 | |
| Utilities for parsing Zeiss CZI files | 55 | |
| A package to add a scale bar to microscopy images | 30 | |
| A fusion algorithm in LSFM | 5 | |
| A package to add a scale bar to microscopy images | 2 | |
| A simple plugin to destripe microscopy images | 1 |
