13 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Deep learning framework for proteomics | 3K | |
| An open-source Python package to unify raw MS data accession and storage. | 3K | |
| modular & open DIA search | 2K | |
| scPortrait is a scalable toolkit to generate single-cell representations from ra... | 870 | |
| An open-source Python package for dia-PASEF methods with Automated Isolation De... | 691 | |
| An open-source Python package of the AlphaPept ecosystem | 688 | |
| Read/write functions to and from spatialdata for Deep Visual Proteomics | 360 | |
| Search- and quantification-engine agnostic biological interpretation of proteomi... | 194 | |
| pDeep | 96 | |
| Fennet | 74 | |
| pGlyco | 64 | |
| Foundation model for MHC class I peptide binding prediction built on deep contra... | 57 | |
| Alpha extraction tools | 6 |
