40 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Prediction of prophages from bacterial genomes | 7K | |
| Pipeline components for real-time phylodynamic analysis | 6K | |
| Collection of scripts and tools for MGnify pipelines | 5K | |
| RESTful API for Deciphon scheduler | 4K | |
| description | 2K | |
| 2K | ||
| Mutalyzer genomic reference retriever. | 1K | |
| Run_dbcan V5 | 1K | |
| tags reads in target bam based on other bam files | 1K | |
| Pan-Genome Analysis Pipeline | 1K | |
| Aligning a large number of protein sequences to a genome | 1K | |
| Loci Visualisation Tool. | 890 | |
| Fast phage annotation tool | 754 | |
| Developing a workflow to assess annotation correctness with structure informatio... | 737 | |
| A visualisation tool for Hi-C dataset. | 584 | |
| High-accuracy SNV calling for bacterial isolates using AccuSNV | 489 | |
| Convert genbank files to a swath of other formats | 439 | |
| Ensembl GenomIO -- pipelines to convert basic genomic data into Ensembl cores an... | 403 | |
| Finds regions with evidence of HGT between plasmids and groups plasmids accordin... | 399 | |
| Convert GFF3 + FASTA to DDBJ annotation | 374 | |
| smallgenomeutilities is a collection of Python scripts to convert alignments bet... | 322 | |
| Locally reassembling haplotypes from BAM files generated by WGS data. | 305 | |
| BoltzNet | 289 | |
| Run_dbcan V5 | 287 | |
| A tool for handling DNA methylation data in bedMethyl format | 275 | |
| An efficient way to guess the library type of your RNA-Seq data. | 266 | |
| Script to convert from GFF to Genbank | 206 | |
| Xu Yuxing's personal tools for biology sequence analysis | 201 | |
| Detection of plant specialized metabolism gene clusters in plants | 189 | |
| Replications origin and terminus prediction in bacterial genomes | 165 | |
| Aquarium strain builder tools | 165 | |
| The Whole Genome Sequencing Coverage Plot (wgscovplot) is a tool to generate HTM... | 165 | |
| GenOuest tools for manipulating Official Gene Sets | 156 | |
| Library of bioinformatics-related utilities | 147 | |
| Annotate Influenza A virus gene segment sequences and output GFF3 files. | 122 | |
| A comprehensive tool for converting DNA FASTA files to annotated GenBank format ... | 120 | |
| command line and desktop tool for microbial variant calling | 95 | |
| Convert GFF3 gene model to DDBJ MSS format | 88 | |
| Tools to enable structural systems biology, forked from SBRG/ssbio | 80 | |
| Xu Yuxing's personal comparative genomics tools | 49 |
