99 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Virus discovery | 21K | |
| Biomolecular emulator | 6K | |
| The Kinase Library Project: a Global Atlas of the Human Protein Kinome | 4K | |
| A python package to query different databases of boldsystems.org v5! | 3K | |
| Ultima Genomics Single Cell utils | 3K | |
| Identifying methlyation motifs in nanopore data | 2K | |
| A tool for analyzing RAS protein structures | 2K | |
| find antimicrobial resistance/ virulence genes in assembled genomes | 2K | |
| Binary Pattern Sequence Recognition. | 2K | |
| XspecT is a very fast, memory efficient and easy-to-use tool to taxonomically cl... | 2K | |
| Automatic Retrieval and ClusTering of Interfaces in Complexes from 3D structural... | 2K | |
| Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding dat... | 1K | |
| Comprehensive Python Module for Protein Data Management: Designed for streamline... | 1K | |
| A sample project that exists for PyPUG's "Tutorial on Packaging and Distributing... | 949 | |
| Utility functions for proteomics data analysis | 925 | |
| set of helper tools for the assembly of the different elements in the RELECOV pl... | 922 | |
| Automated construction of enzyme-constrained models using ECMpy workflow. | 882 | |
| Download, retrieve and process omics data for further bioinformatics | 853 | |
| Analytical framework for BS-seq data comparison and visualization | 830 | |
| Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality v... | 826 | |
| Simulate metabolic flux distributions, gene knockouts, and dynamic modeling for ... | 763 | |
| Transporters annotation using LLM's | 681 | |
| Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding dat... | 628 | |
| Bioinformatics tool for compering large sequence files | 601 | |
| Comprehensive Python Module for Protein Data Management: Designed for streamline... | 576 | |
| Package that includes the code related to the Multiplex Classification Approach ... | 566 | |
| A phylogenetic and geographic analysis tool | 562 | |
| Python package for inference of the gene regulatory network and the boolean netw... | 560 | |
| A tool for mapping surface pockets in PDB structures | 535 | |
| Detection tool for operon and spliced leader designed for direct RNA sequencing | 531 | |
| a python package for automated generation of heuristic phylogenetic trees from g... | 510 | |
| Bioinformatics Reactive Analysis and Visualization Engine | 497 | |
| Process various file format for RNA-Seq data analysis | 490 | |
| A computational approach for identifying cancer driver genes by detecting three-... | 469 | |
| An open-source Python package of the AlphaPept ecosystem | 450 | |
| Script to process fastq files before epi2me analysis | 442 | |
| AltAnalyze3: Advanced RNA-Seq Analysis Workflow | 417 | |
| RBP Activity Inference from Splicing Events | 361 | |
| Evolutionary motion analysis tool | 347 | |
| ConoDictor predicts conopeptides superfamily using generalized profiles and hidd... | 343 | |
| Microbial Genome Prospecting (MiGenPro) combines phenotype and genomic linked da... | 341 | |
| A toolkit to support Golden Gate assembly, along with digestion, gel simulation,... | 322 | |
| Growth Balance Analysis for Python | 314 | |
| Base Editing screens' Activity-Normalized variant effect size estimation | 310 | |
| Anglerfish - Nanopore reads from Illumina libraries | 293 | |
| A lightweight kmer-based algorithm for designing diagnostic CRISPR assays using ... | 286 | |
| A bioinformatics pipeline for basecalling ONT NGS Data. | 285 | |
| PICNIC (Proteins Involved in CoNdensates In Cells) is a machine learning-based m... | 271 | |
| climush bioinformatics, data analysis, and data management tools | 269 | |
| CBTope2: A tool for predicting interactivity of B-cell epitopes | 269 |
