31 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Protein Graph Library | 5K | |
| Versatile pipeline for processing protein structure data for deep learning appli... | 2K | |
| A python package to process protein cross-linking data. | 2K | |
| MolMapNet: An Efficient ConvNet with Knowledge-based Molecular Represenations fo... | 1K | |
| Language models for Biological Sequence Transformation and Evolutionary Represen... | 1K | |
| Protein structure datasets for machine learning. | 987 | |
| Python scripts for dealing with protein structure and pdb files | 971 | |
| Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality v... | 826 | |
| Comprehensive benchmarking of protein-ligand structure prediction methods | 650 | |
| Molecular dynamics simulation toolkit for enzyme-polymer systems | 645 | |
| 3D visualization of proteins | 577 | |
| OVO: an open-source ecosystem for de novo protein design | 563 | |
| A Python Package for Residue Interaction Network | 509 | |
| OneScience是基于先进的深度学习框架打造的科学计算工具包，旨在通过一系列高度集成的组件加速科学研究和技术开发进程。 | 388 | |
| Residue modifications for protein structures. | 362 | |
| A comprehensive accurate assessment approach for deep learning based molecular d... | 297 | |
| 276 | ||
| 256 | ||
| CNN-based protein-ligand scoring function. | 232 | |
| A standardized framework for machine learning on biomolecules. | 226 | |
| 188 | ||
| Reimplementation as a python package of the software for Simple Atom Depth Index... | 177 | |
| Nucleic acid fluorescence labeling for all-atom MD simulations | 173 | |
| Generate customized voxel representations of protein-ligand complexes using GPU. | 160 | |
| Calculate protein structural representations (dihedral angles, CA pairwise dista... | 159 | |
| A package for handling many crystalographic datasets simultainiously | 157 | |
| Skeleton project created by Python Project Wizard (ppw). | 146 | |
| Automated construction of atomistic and coarse-grained models in the PDB format ... | 108 | |
| Comprehensive ensembling of protein-ligand structure and affinity prediction met... | 85 | |
| Tools to enable structural systems biology, forked from SBRG/ssbio | 80 | |
| SAXS modelling from protein structures using hydrated form factors | 68 |
