1,725 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Making bioinformatics fun again | 4.7M | |
| Open source code for AlphaFold. | 73K | |
| Boltz | 63K | |
| A Python Package for Protein Dynamics Analysis | 56K | |
| :pencil2: A versatile DNA sequence optimizer | 54K | |
| BiNgo Genome Viewer — a lightweight browser-based genomics viewer | 38K | |
| :eye: Python library to plot DNA sequence features (e.g. from Genbank files) | 35K | |
| A Swiss-Army-Knife for Bioinformaticians | 31K | |
| Implementation of Alphafold 3 from Google Deepmind in Pytorch | 28K | |
| MoleculeKit: Your favorite molecule manipulation kit | 28K | |
| Convenience Python APIs for antibody numbering using ANARCI | 23K | |
| Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart) | 22K | |
| Clone with Python! Data structures for double stranded DNA & simulation of homol... | 22K | |
| genes and genomes at your fingertips | 21K | |
| EvolutionaryScale open model repository | 21K | |
| Virus discovery | 21K | |
| 👓 Python library to parse Snapgene *.dna files to dict or biopython seqrecord. | 20K | |
| Incubator for useful bioinformatics code, primarily in Python and R | 19K | |
| A Swiss-Army-Knife for manipulating phylogenetic trees | 17K | |
| Antibody Numbering and Antigen Receptor ClassIfication | 15K | |
| Terminal plasmid map viewer and editor | 15K | |
| Add your description here | 15K | |
| Salis Lab's promoter-calculator (Barrick Lab Fork) | 14K | |
| A PipeBio client package | 14K | |
| A simple Python library to generate model peptides | 14K | |
| Toward High-Accuracy Open-Source Biomolecular Structure Prediction. | 13K | |
| Computational genomics pipeline for predicting functional impacts of mutations o... | 13K | |
| a UNIX shell toolkit for processing and analyzing multiple sequence alignments a... | 13K | |
| Antibody numbering software | 11K | |
| 🍊 :page_facing_up: Text Mining add-on for Orange3 | 11K | |
| CryoEM validation toolkit | 11K | |
| PROtein binDIng enerGY prediction | 11K | |
| DockQ is a single continuous quality measure for Protein, Nucleic Acids and Smal... | 11K | |
| Utilities for building standardized command-line interfaces for biosimulation so... | 9K | |
| Maximum likelihood inference of time stamped phylogenies and ancestral reconstru... | 9K | |
| eCharts plotting API. | 8K | |
| MSA(Multiple Sequence Alignment) visualization python package for sequence analy... | 8K | |
| Making Protein folding accessible to all! | 8K | |
| Search and explore genomic metadata, Earth BioGenome Project progress and assemb... | 8K | |
| Lineage prediction from SARS-CoV-2 sequences | 8K | |
| 8K | ||
| Comparative genomics automation and standardization software | 8K | |
| Genome modeling and design across all domains of life | 8K | |
| MetaCHIP2 | 7K | |
| Frequently used commands in bioinformatics | 7K | |
| A Python utility for wrapping Rosetta command line tools. | 7K | |
| Prediction of prophages from bacterial genomes | 7K | |
| Estimation of BDEISS-CT parameters from phylogenetic trees. | 7K | |
| bioat, a python package & command line toolkit for Bioinformatics and data scien... | 7K | |
| Infrastructure of AlphaX ecosystem | 7K |
