22 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Sequana: a set of Snakemake NGS pipelines | 6K | |
| Protein Graph Library | 5K | |
| From taxonomic affiliations to annotated consensus proteomes using UniProt datab... | 2K | |
| Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB... | 915 | |
| Python package for spatial transcriptomics data analysis | 885 | |
| Automated construction of enzyme-constrained models using ECMpy workflow. | 882 | |
| refineGEMs: a python package intended to help with the curation of genome-scale ... | 799 | |
| OpenOmics provides a bioinformatics API and web-app platform integrate and visua... | 393 | |
| Reconstruct metabolic graphs using KEGG database. | 361 | |
| Integration of soil metagenomic data for correlation of microbial markers with p... | 306 | |
| 305 | ||
| This is an asynchronous method of accessing bioservice's db2db function | 295 | |
| 276 | ||
| Run assembler (Canu, Flye, Hifiasm) on a set of long read files | 221 | |
| Simulation of methematical models of signaling pathways of GPCRs | 184 | |
| This is a multithreaded version of various BioServices functions | 183 | |
| OpenSymbiose🧬 in an open-source biotechnology / biology research AI agent design... | 176 | |
| Browse and View Metabolomic datasets | 172 | |
| Toolkits for NCBI GEO and ArrayExpress | 144 | |
| Antotate is a tool allowing for the automatic annotation of Antimony files. | 90 | |
| kegg-ingest | 89 | |
| Tools to enable structural systems biology, forked from SBRG/ssbio | 80 |
