22 dependents
| Package | Description | Downloads/month |
|---|---|---|
| CrossMap is a python program to lift over genome coordinates from one genome ver... | 9K | |
| Sequana: a set of Snakemake NGS pipelines | 6K | |
| Data intensive science for everyone. | 5K | |
| Galaxy application (backend) | 4K | |
| python module to plot beautiful and highly customizable genome browser tracks | 4K | |
| QC package for RNA-seq data. | 3K | |
| Collection of analysis tools for quantitative trait loci | 2K | |
| Data intensive science for everyone. | 2K | |
| Python package to analyze DNA methylation data | 923 | |
| Tools for parsing and plotting nanopore methylation data | 531 | |
| Prediction of lineage-specific gain and loss of sequence elements using phylogen... | 462 | |
| A modernized rewrite of RSeQC (RNA-seq Quality Control) | 430 | |
| Asynchronous genomic comparison and visualization toolkit to perform on local de... | 345 | |
| Tools for filtering reads to remove alignment and annotation bias from cross-spe... | 309 | |
| Fast Window Protection Score calculator for cell-free DNA analysis | 256 | |
| Normalise GWAS studies and map associations to rsIDs. | 215 | |
| Predict disease-causing probability of human intronic SNVs. | 205 | |
| A simple handler for configuration files detailing genomic datasets | 204 | |
| CEAS -- Cis-regulatory Element Annotation System Package (Python3) | 195 | |
| epical --- Epigenetic age Calculator | 190 | |
| EasyFuse is a pipeline to detect fusion transcripts from RNA-seq data with high ... | 103 | |
| CLI tool to link variants to methylation changes from nanopore data | 97 |
