37 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A toolkit for processing single cell Hi-C data | 5K | |
| Clodius is a tool for breaking up large data sets into smaller tiles that can su... | 4K | |
| Lightweight converter between hic and cool contact matrices. | 4K | |
| Helper package which implements HiCMatrix class for HiCExplorer, pyGenomeTracks ... | 3K | |
| Image-processing based detection of architectural stripes from chromatin conform... | 2K | |
| An interactive tool for deciphering CGRs from chromatin contact maps. | 2K | |
| The tools for your .cool's | 2K | |
| METALoci: spatially auto-correlated signals in 3D genomes | 2K | |
| HiC1Dmetrics pip version | 2K | |
| HiNT -- HiC for copy number vairations and translocations detection | 1K | |
| Metagenomic binning based on Hi-C data | 1K | |
| 1K | ||
| Jupyter notebook based genomic data visualization toolkit. | 1K | |
| Set of programs to process, analyze and visualize Hi-C data | 857 | |
| PHi-C2 allows for a physical interpretation of a Hi-C contact matrix | 803 | |
| Similarity metric for 3CSeq derived chromosomal contact matrices | 751 | |
| MCCNado: Rust-based tools for use in processing Micro-Capure-C data using SeqNad... | 688 | |
| Large genome reassembly based on Hi-C data, continuation of GRAAL | 662 | |
| trackc aims to produce beautiful genome tracks that are highly customizable | 616 | |
| A python toolbox for processing SPRITE-seq within the cooler universe | 610 | |
| 592 | ||
| A visualisation tool for Hi-C dataset. | 584 | |
| A complete python package for Translocation detection in HiC genome sequencing. | 495 | |
| Genomics research toolkit for jointly embedding Hi-C 3D chromatin contact matric... | 448 | |
| A model used for Hi-C prediction | 408 | |
| A memory-efficient Python package for managing and analyzing Hi-C data down to s... | 250 | |
| TADGATE is a computational tool to identify TADs in Hi-C contact map with a grap... | 236 | |
| Eukaryotic contigs retrieval and classification tool from genomic contact data | 125 | |
| FIREcaller: Python library for detecting Frequently Interacting REgions (FIREs) ... | 121 | |
| 3D Polymer Simulations - Loop Extrusion model | 120 | |
| Hi-C analysis, snakemake, sequana, container, reproducibility | 112 | |
| Ultra fast chromosome 3D reconstraction. | 102 | |
| Plot Hi-C heatmaps and genomic tracks. | 100 | |
| A command-line utility for converting .hic to .mcool files | 85 | |
| Tool to build, train, and use the differentiable Loop Extrusion Model (dLEM) | 73 | |
| Reconstructing 3D structures of extrachromosomal DNA and other focal amplificati... | 70 | |
| A Unified Axial-aware Framework for Chromatin Loop Annotation in Bulk and Single... | 5 |
