65 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Various genomics tools and scripts used in the GHFC lab | 278K | |
| Dataloader for applying sequence models to personalized genomics | 25K | |
| VCF visualization interface | 18K | |
| A simple observation count database | 11K | |
| CPG workflows for Hail Batch | 5K | |
| Add your description here | 4K | |
| Annotate variants in a VCF file with technical annotations from one or more BAMs | 3K | |
| A python toolkit for single-cell tumor phylogenetic analysis | 2K | |
| Pipeline output Processing Program for Bonsai | 2K | |
| Python package for Genome-Wide Association Studies (GWAS). Implements GLM, MLM, ... | 2K | |
| RFMix-reader is a Python package designed to efficiently read and process output... | 2K | |
| Filter VCF/BCF files with Python expressions. | 1K | |
| The self-evolving agentic framework for bioinformatics | 1K | |
| Pandas ExtensionDtypes for dealing with genomics data | 1K | |
| Genomic allele frequency query engine with bitmap-encoded genotypes | 1K | |
| 1K | ||
| Toolkit for genome-wide analysis of STRs | 1K | |
| vartracker: track the persistence (or not) or mutations during longitudinal sequ... | 879 | |
| Highly scalable inference of ancestral recombination graphs (ARGs) | 848 | |
| Miscelanelous python-based bioinformatics utils | 804 | |
| Powerful statistics for VCF files | 803 | |
| Graph-native data management platform for variant genomics | 760 | |
| Seamlessly import and query all of the beacon protocol collections | 691 | |
| Haplotype clustering in phased genotype data | 686 | |
| Optimal Tool to Phase Structural Variants | 670 | |
| Ancestry and haplotype aware simulation of genotypes and phenotypes for complex ... | 638 | |
| Modern Python implementation of the McDonald-Kreitman test toolkit | 624 | |
| Python library for working with VCF files | 552 | |
| Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data | 503 | |
| Annotated sequence data | 482 | |
| Tools to analyse genetic data in pedigrees | 470 | |
| Variant effect prediction plugin for Kipoi | 367 | |
| Tools for merging Tandem Repeat VCF files | 333 | |
| Benchmark vcf-files against a truth-set of positive controls | 298 | |
| Read-based variant phasing with methylation integration for long-read sequencing | 289 | |
| Convert gVCF into BED | 288 | |
| Visualization of genotype profiles on population genomics data for detection of ... | 277 | |
| Flag STR coverage drops in LRS data | 276 | |
| Biofilter: cloud-ready biological knowledge system | 273 | |
| Add your description here | 262 | |
| Python Breeding Optimizer and Simulator: A Python library for simulating and opt... | 236 | |
| A test python toolkit for variant site analysis | 228 | |
| CLI Tool for efficiently migrating VCF files into relational database (Postgres) | 199 | |
| Pathogenic Predictor of Deep-Intronic Variants causing Aberrant Splicing | 198 | |
| create a bedgraph of the VAF from a DeepVariant individual vcf file | 183 | |
| Browser-based tool for visualizing and analyzing germline copy number variants i... | 180 | |
| Polyploid Haplotype Analysis for Sequenced Eukaryotic References - A comprehensi... | 176 | |
| Python genomic features extractor from raw files. | 168 | |
| himut: single molecule somatic single-base substitution detection using PacBio C... | 146 | |
| A rapid, accurate and flexible (core-genome) multi-locus sequence typing (MLST) ... | 143 |
