53 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Tool for segmentation in bioimaging | 17K | |
| Python library for converting WSI files to DICOM | 7K | |
| spaCR Spatial phenotype analysis of CRISPR–Cas9 screens (spaCR) | 5K | |
| This repository provides a collection of tools to simplify reading CZI (Carl Zei... | 3K | |
| Bio image reading, metadata and some affine registration. | 3K | |
| Analyze fluorescence fluctuation spectroscopy data with array detectors | 2K | |
| Napari plugin for spatial RNA quantification | 2K | |
| Minimal app for big fish. | 2K | |
| A deep learning based tool to segment epithelial tissues. The epyseg GUI can be ... | 2K | |
| A simple plugin to use phasor analysis | 1K | |
| A python based GUI to annotate images and save annotations as COCO style JSON fo... | 1K | |
| Package to analyze calcium fluorescence events in astrocytes | 1K | |
| Module for simple image and database manipulations. | 1K | |
| image2image-reader plugin | 1K | |
| Spatial phenotype analysis of crisp screens (SpaCr) | 1K | |
| Point-Scanning Super-Resolution 2 | 867 | |
| Bacterial segmentation and analysis platform than can inport/export files in mul... | 705 | |
| Align microscopy images using custom-defined structural patterns and superimpose... | 652 | |
| Calcium imaging analysis of bovine DRG neurons | 588 | |
| multimodal whole slide image registration in a graph structure | 561 | |
| An aggregate of functions I find useful | 485 | |
| Effortless Creation of High-Quality Scientific Figures | 476 | |
| Plant mesh phenotyping using python | 465 | |
| UNRAVEL: UN-biased high-Resolution Analysis and Validation of Ensembles using Li... | 423 | |
| Generate consensus 3D cells segmentations by combining 2D cell segmentations fro... | 394 | |
| Registration of 3D multiplex images with one common channel | 376 | |
| A custom package for counting synapses | 343 | |
| An interactive cell selection tool for spatial omics | 334 | |
| Registration of 3D movies applied to all channels | 330 | |
| imagetensors provides a standardized, unified interface for reading multiple pro... | 315 | |
| TissueLab SDK | 312 | |
| An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-cod... | 260 | |
| This package makes easy to replicate figures and movies from microscopy data fro... | 242 | |
| Install all packages by cgohlke | 227 | |
| OMIO is a Python library for reading, organizing, merging, visualizing, and expo... | 226 | |
| Evolve your OpenCV Image Processing filters using Cartesian Genetic Programming | 217 | |
| Image Processing and Analysis toolbox package | 187 | |
| 183 | ||
| 3D Segment ascidian embryos using cellpose. The images are first rescaled to be ... | 174 | |
| Locate bacteria in CLSM obtained infected bone tissue images | 149 | |
| Python3 package to analyse GPSeq images and manage TIFF files. | 147 | |
| A comprehensive Python pipeline for detecting, quantifying, and analyzing FISH (... | 138 | |
| 134 | ||
| Convert czi files to images and/or video. | 119 | |
| 117 | ||
| Radial Image Analysis Toolkit | 111 | |
| Peek into Zeiss CZI files — temporal and Z-stack metadata at a glance | 91 | |
| A pipeline for stuff #TODO: Get knowledge to write a proper description Pitcount | 87 | |
| The zisraw package is deprecated. Please use the czifile package instead. | 76 | |
| Install requirements for the SimFCS software | 60 |
