60 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Reproject astronomical images | 155K | |
| An open and interoperable data framework for spatial omics data | 105K | |
| Spatial Single Cell Analysis in Python | 43K | |
| SpatialData IO for common techs | 25K | |
| Earth Observation Platform Core Python Modules | 9K | |
| Miscellaneous Algorithmic helper methods | 8K | |
| PIVTOOLs - Particle Image Velocimetry Tools with CLI and GUI | 7K | |
| a napari plugin for labeling and refining keypoint data within DeepLabCut projec... | 5K | |
| Utilities for scaling geospatial analyses | 5K | |
| xcube is a Python package for generating and exploiting data cubes powered by xa... | 5K | |
| Registration and fusion of large imaging datasets in 2D and 3D. | 5K | |
| A backend implmentation for xarray that allows for analysis-ready reading of ESA... | 4K | |
| RMRS Raster Utility Project | 4K | |
| A package to resample, reproject, and rectify geospatial datasets. | 4K | |
| Enabling interoperability and scalability in ocean sonar data analysis | 3K | |
| Single Cell Extraction and Morphological Analysis of Whole Slide Images | 3K | |
| A microscopy image processing toolkit. | 3K | |
| Package introducing the InSituPy framework to analyze single-cell spatial transc... | 2K | |
| QIM tools and user interfaces for volumetric imaging | 2K | |
| A Python package for utilities and classes related to the file I/O, dataset reco... | 2K | |
| Python toolkit for analyzing bioacoustic data | 2K | |
| Omnipose: a high-precision solution for morphology-independent cell segmentation | 1K | |
| An open-source Python toolkit for large-scale fluorescence microscopy data align... | 1K | |
| Package to analyze calcium fluorescence events in astrocytes | 1K | |
| Python package for interactive visualization of imaging-based spatial transcript... | 1K | |
| Fast, volumetric cell detection. In development. | 1K | |
| Library for tracking motion in cardiac mps data | 1K | |
| Analysis pipeline for rodent widefield calcium imaging data. | 1K | |
| Marine Extremes detection, identification, and tracking/merging for Exascale Cli... | 1K | |
| Explore your X-Ray Fluorescence spectral images | 937 | |
| A light-weight python package for extracting features from geospatial imagery | 876 | |
| 830 | ||
| A Python package and CLI to view XML annotations and NumPy masks. | 770 | |
| A python wrapper around clij2 opencl FFT algorithms | 692 | |
| Single-molecule fluorescence data extraction and analysis. | 674 | |
| xarray-based tools for image/video processing | 655 | |
| A GUI for (imaging) mass cyometry analysis predominantly based on the popular St... | 644 | |
| Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in... | 588 | |
| Create pipelines for preprocessing image data for biodiversity analysis. | 549 | |
| GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial System... | 475 | |
| Comprehensive package for analysis of Optical Pooled Screens (OPS) for biologica... | 385 | |
| 341 | ||
| Toolbox for viewing, analyzing, and manually correcting (cell) segmentation in n... | 341 | |
| Registration to BrainGlobe atlases in napari using Elastix | 303 | |
| Interactive multi-dimensional data analysis and visualization | 294 | |
| 285 | ||
| Napari plugin for visualization of IM datasets using Dask for lazy data-loading. | 284 | |
| Sentinel-2 features processing | 239 | |
| A napari plugin for stitching large tiled 3D imaging datasets | 200 | |
| Lab for quantitative bioimage analysis experiments in Python | 175 |
