19 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Cutadapt removes adapter sequences from sequencing reads | 74K | |
| Bioinformatics genetic barcode demultiplexing (Spatial Transcriptomics) | 19K | |
| A toolkit for processing single cell Hi-C data | 5K | |
| A fast FASTQ filter program. | 1K | |
| Ultra-fast 5' and 3' demultiplexer | 838 | |
| Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in... | 588 | |
| Precise host read removal | 535 | |
| Fork of cutadapt with folitools performance patches (SeedMultiAdapterFilter, pig... | 532 | |
| Tooling for PCR primer scheme definitions | 474 | |
| Indel-aware consensus for aligned BAM | 417 | |
| ST Pipeline contains the tools and scripts needed to process and analyze the raw... | 415 | |
| Primalscheme3. Generation of highly multiplex primerschemes | 395 | |
| DNA encoded library sequence analysis software with custom library design suppor... | 302 | |
| API client for the Malva search engine | 294 | |
| Transposon data process | 209 | |
| A python module to process minion fastq files by concatenating reads as they are... | 196 | |
| Robust individual and aggregate checksums for nucleotide sequences | 189 | |
| QUIck Clonal Analysis Toolkit - quicat | 173 | |
| Precise host read removal | 71 |
