56 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Implementation of Alphafold 3 from Google Deepmind in Pytorch | 28K | |
| Toward High-Accuracy Open-Source Biomolecular Structure Prediction. | 13K | |
| A powerful and flexible machine learning platform for drug discovery | 2K | |
| Python module for running Defense Predictor, a machine learning model to predict... | 2K | |
| Sandbox for Computational Protein Design | 2K | |
| Implementation of AlphaFold 3 in PyTorch Lightning + Hydra | 2K | |
| single cell foundation model for Gene network inference and more | 1K | |
| PlantsSM | 1K | |
| Learned Scoring Function for MSA | 1K | |
| CETSA analysis and deep learning toolkit for binding curves, hit calling, and pr... | 1K | |
| Residue-level epitope prediction pipeline for peptide/protein workflows. | 855 | |
| Adapting protein language models and contrastive learning for highly-accurate dr... | 573 | |
| Semi-automated protein discovery pipeline using BLAST, quality control, and lang... | 568 | |
| Python package for generation of protein sequences and evolutionary alignments v... | 495 | |
| Predict kinase-substrate interactions. | 483 | |
| scPRINT-2 is a Large Cell Model for Gene Network Inference, Denoising and more f... | 463 | |
| Protein Set Transformer (PST) framework for training protein-language-model-base... | 461 | |
| PRotein Ortholog Search Tool is a fast and accurate tool to detect remote homolo... | 448 | |
| Extract protein embeddings from FASTA files using ESM-2, ProtT5, and ProtBert mo... | 413 | |
| motif conservation in IDRs through pairwise k-mer alignment | 408 | |
| Graph Network for protein-protein interface including language model features | 390 | |
| Benchmarking framework for protein representation learning. Includes a large num... | 376 | |
| 294 | ||
| 288 | ||
| This repo contains source codes for a Reaction Prediction tool namely RXNRECer | 257 | |
| 256 | ||
| Tool to extract sequence representations from protein language models | 243 | |
| A de novo generation pipeline leveraging evolutionary information for broad-spec... | 232 | |
| Embedding Kit for embedding models | 217 | |
| ProteusAI is a library for the machine learning driven engineering of proteins. ... | 217 | |
| A nanobody thermostability prediction tool | 210 | |
| Unified RNA Analysis Toolkit - ML-powered RNA sequence analysis and structure pr... | 205 | |
| AbTune: layer-wise selective Fine-Tuning of protein language models for Antibodi... | 200 | |
| A Deep Learning Framework for Cellular Senescence Detection from Protein Sequenc... | 188 | |
| A tool for predicting IL-6-inducing peptides | 175 | |
| Python package for generation of protein sequences and evolutionary alignments v... | 175 | |
| Protein Redesign using Raygun | 150 | |
| AntiFP2: A tool for prediction of Antifungal Proteins | 141 | |
| A deep learning approach that leverages language processing neural network model... | 122 | |
| Protein chemical shift prediction based on Protein Language Model | 110 | |
| DeepFrag2: A Deep Learning Framework for Fragment-Based Lead Optimization | 109 | |
| Predict kinase-substrate interactions. TEST VERSION!!! JUNK OUTPUT!!! | 108 | |
| A pLM-based metric to assess protein site conservation and variability. | 106 | |
| Prediction of enzyme kinetic parameters using deep learning models | 104 | |
| The project is about using a pretrained protein transformer architecture to crea... | 100 | |
| Reverse Distillation for Protein Language Models | 89 | |
| A package to auto-install specified dependencies for aurabind | 88 | |
| Protein chemical shift prediction based on Protein Language Model | 86 | |
| Protein chemical shift prediction based on Protein Language Model | 84 | |
| Protein chemical shift prediction based on Protein Language Model | 75 |
