103 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A set of python tools to deal with PDB chemical components definitions for small... | 198K | |
| Boltz | 63K | |
| A language model suite for numbering antigen receptor sequences. | 30K | |
| Implementation of Alphafold 3 from Google Deepmind in Pytorch | 28K | |
| NucleoFind: A Deep-Learning Network for Interpreting Nucleic Acid Electron Densi... | 22K | |
| Toward High-Accuracy Open-Source Biomolecular Structure Prediction. | 13K | |
| A PyQt widget to display crystal structures | 11K | |
| Structure refinement and validation for crystallography and single particle anal... | 6K | |
| Chai Discovery tools for AI + protein research. | 6K | |
| Protein design | 6K | |
| A pynxtools reader plugin for Raman data | 5K | |
| Python module to interact with Fragalysis | 5K | |
| Tools for exploring reciprocal space | 5K | |
| A Python library for visualizing protein structures in 2D. | 5K | |
| "Python utils for EM data processing (dev version)" | 4K | |
| 📦 Diffraction data analysis library | 4K | |
| Boltz for VSYNTHES | 3K | |
| Toolkit for structure-based deep learning on RNA. | 3K | |
| Algorithms for Single Particle Reconstruction | 3K | |
| Automated model-building pipeline for X-ray crystallography and cryo-EM | 3K | |
| API for common data processing operations. | 3K | |
| A framework for processing adsorption data and isotherm fitting | 2K | |
| Arpeggio calculates interatomic contacts based on the rules defined in CREDO. | 2K | |
| OpenProtein Python interface. | 2K | |
| macromolecular structure files (.pdb/.mmCIF) as pandas DataFrames | 2K | |
| Log MD trajectories. | 2K | |
| CIF file editor | 2K | |
| Sails - Software for the Automated Identification of Linked Sugars | 2K | |
| Descriptors (isometry invariants) of crystals based on geometry. | 2K | |
| A tool for 2D protein visualization aimed at improving the comparability of prot... | 2K | |
| Protein Ligand INteraction Dataset and Evaluation Resource | 2K | |
| EM pipeline relion_it with crYOLO support | 2K | |
| A package for creating and handling input files for vasp | 2K | |
| Structural heterogeneous cryoEM reconstruction: https://github.com/Gabriel-Ducro... | 2K | |
| This python package works with PISA to analyse data for macromolecular interface... | 2K | |
| Sandbox for Computational Protein Design | 2K | |
| PXMeter is a comprehensive toolkit for evaluating the quality of structu... | 2K | |
| Utility functions for Time Resolved Serial Femtosecond Crystallography | 2K | |
| Python package to search/retrieve/filter proteins and protein structures | 2K | |
| Implementation of AlphaFold 3 in PyTorch Lightning + Hydra | 2K | |
| Differentiable pipeline connecting protein atomic models and scattering observab... | 2K | |
| A crystal structure finder written in PyQt5 and Python3 | 1K | |
| Services and configuration for cryo-EM pipelines | 1K | |
| An Enhanced tool to process PDB structures based on Gemmi | 1K | |
| wwPDB messaging module | 1K | |
| A Python Package used for CoRE MOF Database | 1K | |
| Comprehensive Python Module for Protein Data Management: Designed for streamline... | 1K | |
| Structure-based antibody renumbering | 1K | |
| Python drug discovery toolkit for Boltz2 structure and affinity prediction, Bolt... | 992 | |
| Calculate density from X-ray reflections and a model | 971 |
