43 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Easily gather data from across NCBI databases | 7K | |
| python module to plot beautiful and highly customizable genome browser tracks | 4K | |
| Python utility libraries on genome assembly, annotation and comparative genomics | 3K | |
| Transcript discovery and quantification with long RNA reads (Nanopores and PacBi... | 2K | |
| Command-line tool for visualizing batches of prokaryotic genomes | 2K | |
| Gene cluster comparison figure generator | 2K | |
| An example package | 2K | |
| Pathway Tools multiprocessing wrapper (for PathoLogic). | 1K | |
| Find clustered hits from a BLAST search | 1K | |
| omniCLIP is a CLIP-Seq peak caller | 1K | |
| ✂️ Deep learning-based splice site predictor that improves spliced alignments | 1K | |
| Program to find core gene consensus synteny, hotspots between these, and constru... | 952 | |
| refineGEMs: a python package intended to help with the curation of genome-scale ... | 799 | |
| Python tools for proteogenomics analysis toolkit | 796 | |
| Tools for accessing CHADO databases. | 782 | |
| SMAP is a software package that analyzes next-generation DNA sequencing read map... | 772 | |
| A robust Python tool for the annotation of 3’ UTRs | 755 | |
| Python tool for the analysis and visualization of mobile genetic elements | 735 | |
| Using gffutil Python module with AI | 723 | |
| Feature extraction and analysis toolkit for antisense oligonucleotide design. | 706 | |
| 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies | 604 | |
| https://midas2.readthedocs.io/en/latest/ | 567 | |
| 521 | ||
| 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing pa... | 500 | |
| Convert GFF, fastas, annotation table and species name into Genbank. | 387 | |
| Pipemake Utilities | 382 | |
| Asynchronous genomic comparison and visualization toolkit to perform on local de... | 345 | |
| 300 | ||
| RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes | 256 | |
| H2M is a Python pipeline for precise modeling of human variants in the mouse gen... | 233 | |
| An object-oriented Python library for working with genomic data. | 222 | |
| A tool to extract variants specific to a Gene of Interest (GOI) | 215 | |
| A package for estimating alternative polyadenylation events from scRNA-seq data. | 211 | |
| [UNSTABLE] A package of custom tools to tackle bioinformatic projects. | 193 | |
| A tool for finding duplicated exons in annotated genomes | 173 | |
| DedUCE is a tool for efficiently finding ultra-conserved elements across multipl... | 148 | |
| Bio-Wrangler is a Python package for bioinformatics data wrangling. It helps loa... | 132 | |
| https://midas2.readthedocs.io/en/latest/ | 130 | |
| A de novo mutation simulation framework | 110 | |
| EasyFuse is a pipeline to detect fusion transcripts from RNA-seq data with high ... | 103 | |
| transcript plots | 84 | |
| Accurate estimation and robust modelling of translation dynamics at codon resolu... | 80 | |
| Multi-agent bioinformatics analysis system with comprehensive capabilities | 50 |
