29 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Functions using mygene to show gene summaries and gene annotation plots in Jupyt... | 5K | |
| This is the alpha version of the CellOracle package | 3K | |
| Python utility libraries on genome assembly, annotation and comparative genomics | 3K | |
| An example package | 2K | |
| Functional ANnoTAtion based on embedding space SImilArity | 1K | |
| Deciphering the Complexity of Spatial-Temporal Transcriptomic and Proteomics via... | 1K | |
| TFit : Assessing the combinatorial potential of Transcription Factors in Gene Re... | 1K | |
| Comprehensive Python Module for Protein Data Management: Designed for streamline... | 1K | |
| Protein structure datasets for machine learning. | 987 | |
| Utility functions for proteomics data analysis | 925 | |
| funannotate: eukaryotic genome annotation pipeline | 831 | |
| Python package for integrating and analyzing multiple single-cell datasets (A Py... | 813 | |
| Phylogenetic profiling with orthology data | 692 | |
| Gene-centric functional enrichment analysis summarisation tool | 630 | |
| GeneWalk identifies relevant gene functions for a biological context using netwo... | 623 | |
| Tool to stratify GO terms based on first significant parent | 435 | |
| Convenience functions for mass spectrometry proteomics & lipidomics analysis, pa... | 422 | |
| OpenOmics provides a bioinformatics API and web-app platform integrate and visua... | 393 | |
| Python version of R package SLIDE | 334 | |
| Fast genome-wide DTL(Duplication-Transfer-Loss) event mapping tool | 292 | |
| GOpiscator is a command-line tool for performing gene set enrichment analysis us... | 257 | |
| Transcription Factor Co-Occurrence using Market Basket analysis | 256 | |
| Package for standardization and evaluation of biological networks | 220 | |
| Quantitative microbiome analysis | 190 | |
| Biologically Guided Variational Inference for Interpretable Multimodal Single-Ce... | 142 | |
| a package to provide additional report from DIANN's output of proteomics experim... | 124 | |
| Package to preprocess ontologies and train OntoVAE models. | 93 | |
| Toolbox of interpretable VAE models | 78 | |
| Comprehensive Python Module for Protein Data Management: Designed for streamline... | 69 |
