257 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Python helpers for G4X. | 430K | |
| nnU-Net is a framework for out-of-the box image segmentation. | 87K | |
| a generalist algorithm for cellular segmentation with human-in-the-loop capabili... | 85K | |
| TiffSlide - cloud native openslide-python replacement based on tifffile | 43K | |
| Spatial Single Cell Analysis in Python | 43K | |
| anomalib - Anomaly Detection Library | 37K | |
| Python modules to work with large multiresolution images. | 36K | |
| IBL libraries | 33K | |
| Computational Pathology Toolbox developed by TIA Centre, University of Warwick. | 32K | |
| oneat = Osis Network for Event as Action Topologies. Available via pip package o... | 32K | |
| Read Carl Zeiss image files (CZI). | 32K | |
| Image transformation, compression, and decompression codecs. | 30K | |
| MedVAE is a family of six medical image autoencoders that can encode high-dimens... | 25K | |
| SpatialData IO for common techs | 25K | |
| A parser intended for use with VirtualiZarr to create virtual Zarr stores from T... | 22K | |
| Python libraries for loading, running and packaging bioimage.io models | 22K | |
| Seti Astro Suite Pro | 18K | |
| Tool for segmentation in bioimaging | 17K | |
| A BioIO reader plugin for reading TIFFs using Tifffile | 16K | |
| A BioIO reader plugin for reading Tiff files in the OME format. | 14K | |
| Interface to the Bioformats Java library | 10K | |
| Conversion of neuroimaging data for display in Neuroglancer | 8K | |
| Neuron geometry library for swc format. | 8K | |
| The imagecodecs-lite package is deprecated. Use the imagecodecs package instead. | 7K | |
| Python library for converting WSI files to DICOM | 7K | |
| PIVTOOLs - Particle Image Velocimetry Tools with CLI and GUI | 7K | |
| FEZrs is an advanced Python library developed by FEZtool for remote sensing appl... | 6K | |
| A Python package to download neuronal morphologies | 6K | |
| Python library for reading tiles from wsi tiff-files. | 5K | |
| Generate synthetic Healpix or 2D data using Cross Scattering Transform | 5K | |
| Details about the package | 5K | |
| Utilities for scaling geospatial analyses | 5K | |
| COPEX high rate compression quality metrics | 5K | |
| NeuroPoly fork of nnU-Net | 4K | |
| Rasteret is a library for 20x+ faster reads of GeoTIFF than Rasterio/GDAL. Inter... | 4K | |
| Focus stacking software with an interactive GUI and Python API for advanced imag... | 3K | |
| 3K | ||
| visualize histology images with umap | 3K | |
| Tracking by Association with Transformers | 3K | |
| Visualize and maintain datasets to develop and understand data-driven algorithms... | 3K | |
| A Python library for multi-object tracking data structures and algorithms | 3K | |
| A library for efficient processing and analysis of whole-slide pathology images. | 3K | |
| Conversion of medical images to MHA and TIFF. | 3K | |
| Bio image reading, metadata and some affine registration. | 3K | |
| Xenium I/O, multimodal analysis, topology workflows, and contour-native spatial ... | 2K | |
| MicroLive: An Image Processing Toolkit for Quantifying Live-cell Single-Molecule... | 2K | |
| EarthOne Python Client | 2K | |
| A collection of python scripts to help with data preparation, processing and ana... | 2K | |
| OME-TIFF IO in python | 2K | |
| X-ray Data Analysis in Real Time | 2K |
