72 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Static plotting for spatialdata | 45K | |
| Spatial Single Cell Analysis in Python | 43K | |
| PATATO: A Python PhotoAcoustic Tomography Analysis Toolkit | 21K | |
| A single package in Python unifying scripts and modules for reading, writing, si... | 10K | |
| High-level API for attractive and descriptive image visualization in Python | 5K | |
| Scripts and notebooks to visualize output from the NASA Ames Stereo Pipeline | 4K | |
| A python package and graphical user interface to perform single-cell analysis fo... | 3K | |
| Deep Audio Segmenter | 3K | |
| Accessible and interoperable whole slide image analysis | 3K | |
| A Python package to facilitate the development, parallel simulation, optimizatio... | 3K | |
| Single Cell Extraction and Morphological Analysis of Whole Slide Images | 3K | |
| Creating figures and animations for multi-channel images with a focus on microsc... | 2K | |
| MicroLive: An Image Processing Toolkit for Quantifying Live-cell Single-Molecule... | 2K | |
| Segmentation-free Analysis of In Situ Capture data | 2K | |
| Basic geoprocessing tools to handle geotiff and shapefile data | 2K | |
| A toolbox for analysing and simulating Image Scanning Microscopy (ISM) datasets. | 2K | |
| NP-SAM is an easy-to-use segmentation and analysis tool for nanoparticles and mo... | 2K | |
| napari widgets for start-to-finish batch processing | 2K | |
| MARS-S2L Plume detection, segmentation and quantification of methane plumes in S... | 1K | |
| A single package for analyzing atomic resolution STEM, 4D-STEM and STEM-EELS dat... | 1K | |
| A python library for correlating EBSD and HRDIC data | 1K | |
| Functions for analysis of high resolution electron microscopy and spectroscopy d... | 1K | |
| Simplify the generation of maps using Cartopy | 1K | |
| Package to manipulate microfading data | 1K | |
| JAX based ptychography reconstructions through differentiable programming. | 1K | |
| A Python package for AI-based comprehensive analysis of sarcomere structure and ... | 958 | |
| A napari plugin to analysis point spread functions. | 899 | |
| Accurate segmentation of bacterial microscope images using deep learning synthet... | 858 | |
| Performs accessibility analysis | 831 | |
| A toolkit for subcellular analysis of spatial transcriptomics data | 741 | |
| Differentiable and Modular Optical Microscopy Simulations and Inversions | 710 | |
| Toolset to load and manipulate SNOM/AFM data | 683 | |
| A python package to analyze matrix fiber alignment around cells (proxy for cellu... | 670 | |
| A GUI for (imaging) mass cyometry analysis predominantly based on the popular St... | 644 | |
| Pythonic bindings for imgui/implot | 639 | |
| NATURESCAPES shoreline analysis | 610 | |
| Python package for hyperspectral satellite imaging of trace gases | 591 | |
| Streamlined analysis for multiple STEM modalities. | 582 | |
| A continuation of napari-psf-analysis for CFIM | 563 | |
| A Python package to conduct 3D Traction Force Microcopy on multicelluar aggregat... | 514 | |
| A python tool to investigate cell overlaps in imaging-based spatial transcriptom... | 476 | |
| GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial System... | 475 | |
| A Python package for visualization of biological data, similar to how composite ... | 444 | |
| Package for cell directionality quantification. | 420 | |
| A suite of Python tools for use with Anasys Instruments products | 408 | |
| RECOVAR cryo-EM heterogeneity analysis | 372 | |
| Python code for processing neural timeseries | 372 | |
| GridFIA - Python API for spatial forest biomass analysis | Part of fiatools.org | 352 | |
| A Python package for feature extraction of neural morphologies | 317 | |
| An open-source library to process smart card payment data, infer trips' destinat... | 314 |
