28 dependents
| Package | Description | Downloads/month |
|---|---|---|
| 📮 An integrative registry of biological databases, ontologies, and nomenclatures... | 231K | |
| 🪝 What's the latest version for each database? | 187K | |
| 🎡 Unified access to OLS instances like from the EBI and TIB | 32K | |
| 🤖 A Python library for learning and evaluating knowledge graph embeddings | 22K | |
| Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that ... | 9K | |
| 📛 A Python package for using ontologies, terminologies, and biomedical nomenclat... | 8K | |
| A tool for automated uploading and version management of scientific data to Zeno... | 5K | |
| Automate downloading and processing PubMed in bulk | 4K | |
| Write reproducible code for getting and processing ChEMBL | 4K | |
| ❓y0 (pronounced "why not?") is for causal inference in Python | 3K | |
| Don't worry about DrugBank licensing - write code that knows how to download it ... | 3K | |
| 2024 Capstone project | 2K | |
| Tools for handling .upf (Unified Pseudopotential Format) files | 2K | |
| Tools for handling input and output files of oncvpsp.x | 1K | |
| Reproducibly download the latest version of DepMap datasets | 329 | |
| 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feed... | 292 | |
| Direct-to-SVG small molecule drawer. | 288 | |
| Download and structure data from https://tess.elixir-europe.org | 204 | |
| Bayesian logistic regression modeling | 201 | |
| Python package to predict membrane permeability of cyclic peptides. | 196 | |
| Generate, export and use RDF schemas. | 141 | |
| Assemble biomedical knowledge | 125 | |
| Assess the quality of biomedical ontologies | 101 | |
| Biomedical semantics and pragmatics. | 87 | |
| Greener pastures for prefixes, CURIEs, and URIs | 75 | |
| A meta-registry for ontologies, controlled vocabularies, and semantic spaces | 63 | |
| An interoperability layer for open educational resources and learning materials | 60 | |
| Pydantic models for the input of Wannier90 | 53 |
