123 dependents
| Package | Description | Downloads/month |
|---|---|---|
| GridDataFormats is a pure Python library to handle data on a regular grid using ... | 641K | |
| CryoEM validation toolkit | 11K | |
| Next Generation Nexus Generator | 7K | |
| Definitions for a collaborative cryoET annotation tool. | 6K | |
| Data intensive science for everyone. | 5K | |
| Base Scipion plugin defining objects and protocols for EM | 4K | |
| Computational Crystallography Toolbox | 4K | |
| Generate realistic PDB files with mixed secondary structures for testing, educat... | 4K | |
| "Python utils for EM data processing (dev version)" | 4K | |
| CryoEM validation toolkit | 4K | |
| Matrix Optimization with Low-rank factorization for Automated analysis of SEC-SA... | 3K | |
| Algorithms for Single Particle Reconstruction | 3K | |
| Base tomography Scipion plugin with data model definition | 3K | |
| Segmentation of cryo-electron tomography data - https://ais-cryoet.readthedocs.o... | 3K | |
| Tools for extracting data and metadata from scientific data files | 2K | |
| Tools for handling FIB-SEM data and annotations | 2K | |
| A 3D interactivity toolbox for napari | 2K | |
| Structural heterogeneous cryoEM reconstruction: https://github.com/Gabriel-Ducro... | 2K | |
| Particle selection tool for cryo-em | 2K | |
| Data intensive science for everyone. | 2K | |
| Simulate a 3D scattering potentials from PDB files | 1K | |
| Python tools to run cisTEM programs and code | 1K | |
| Services and configuration for cryo-EM pipelines | 1K | |
| Package to handle Xmipp Metadata and image binary data | 1K | |
| Simple API for automated tilt-series alignment in IMOD | 1K | |
| A cryo-electron microscopy image simulation library for building data analysis i... | 1K | |
| A lightweight Python API for AreTomo | 1K | |
| Tool to process cryo-em data for deep-learning | 1K | |
| Convert scientific image formats (TIFF, MRC, N5) to OME-Zarr | 1K | |
| Voxelium - a powerful tool for volumetric CryoEM processing. | 1K | |
| Toolbox for molecular animations in Blender, powered by Geometry Nodes. | 1K | |
| Location & Orientation of Particles found using Two-Dimensional Template Matchin... | 1K | |
| Dynamo tomography plugin for Scipion | 1K | |
| Scripts and Tools for Electron Microscopy Image Analysis. | 1K | |
| membrane segmentation in 3D for cryo-ET | 1K | |
| Stitches together mosaic images taken in Cockpit (Micron) into a universally rea... | 1K | |
| modular Python packages for cryo-EM and cryo-ET | 971 | |
| Python Template Matching Engine | 954 | |
| Code to deal with starfiles and mrcs files | 912 | |
| GPU-accelerated template matching for cryo-ET | 898 | |
| wwPDB EMDB to XML converter | 877 | |
| Web application for monitoring EM results | 873 | |
| Picking procedure for cryo em tomography | 872 | |
| Python module to read/write SerialEM .nav files. | 850 | |
| Basic utilities for CryoEM data manipulation | 838 | |
| ExoDeepFinder is an original deep learning approach to localize macromolecules i... | 821 | |
| Plot the histogram of local resolution values of a cryo-EM reconstruction | 811 | |
| CryoSieve: a particle sorting and sieving algorithm for single particle analysis... | 795 | |
| Tool to trace cryoEM SPA processing results through the magnification hierarchy ... | 786 | |
| A modern RELION GUI | 768 |
