18 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Sequana: a set of Snakemake NGS pipelines | 6K | |
| API to read, write, and filter DNA sequence alignment files | 3K | |
| A library for QC report based on MultiQC framework | 3K | |
| One liner tool to check the quality of your single-cell atlases. | 2K | |
| QC on various type of pacbio data | 702 | |
| Pipeline for UMI error correction and variant calling from amplicon sequencing d... | 619 | |
| preprocessing functions for ChIP-seq and RNA-seq in Fungi with WonderPeaks | 582 | |
| A Python toolkit for bulk RNA-seq analysis of the tumor microenvironment, transf... | 446 | |
| 306 | ||
| HIV Resistance Interpretation & Scoring Engine | 304 | |
| scATAC-seq utils | 245 | |
| MultiQC plugin to add extra columns to the General Statistics table | 206 | |
| MultiQC plugin for Dumpling DMS pipeline | 187 | |
| MultiQC plugin for extra Xenium spatial transcriptomics analysis | 148 | |
| A Python package for high-throughput transcriptomics (HTTr) analysis using Bayes... | 126 | |
| Custom MultiQC modules for FUSILLI fusion detection pipeline | 121 | |
| MultiQC plugin for Illumina SAV InterOp visualizations | 71 | |
| Pre-release version for testing purposes only | 32 |
