29 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A framework that allows processing of multi-modal single-cell data | 11K | |
| 3K | ||
| Graph-linked unified embedding for single-cell multi-omics data integration | 1K | |
| Graph-based Contrastive Learning enable Fast Single-Cell Embedding | 804 | |
| Transferable spatial omics deconvolution | 789 | |
| Single-Cell RNA-seq data analysis. | 780 | |
| Probabilistic factor analysis model with covariate guided factors | 540 | |
| Semi-paired single-cell multimodal integration with Champollion | 430 | |
| Panpipes - multimodal single cell pipelines | 396 | |
| Probabilistic factor analysis model with covariate guided factors | 358 | |
| A python package for chromVAR | 352 | |
| TrajAtlas, a trajectory-centric framework reveals differentiation heterogenity a... | 321 | |
| Python package to validate mudata objects. | 311 | |
| Multimodal datasets, in MuData format | 288 | |
| Python package for single-cell analysis with multiple kernel learning. | 274 | |
| 236 | ||
| Package for the scSpecies workflow. | 200 | |
| Harreman infers metabolic exchanges in tissues using spatial transcriptomics. | 164 | |
| Biologically Guided Variational Inference for Interpretable Multimodal Single-Ce... | 142 | |
| scConfluence is a novel diagonal integration method combining uncoupled autoenco... | 139 | |
| Epiverse is the fundamental package for single cell Assay for Transposase-Access... | 132 | |
| scverse bundle | 131 | |
| scDiffusion-X: Diffusion Model for Single-Cell Multiome Data Generation and Anal... | 130 | |
| Machine learning development environment for single-cell sequencing data analyse... | 120 | |
| SMART is a computational framework for spatial multi-omic integration. SMART lev... | 113 | |
| Storage and visualization of long read based single cell datasets | 102 | |
| Mapping multi-scale gene regualtion using single-cell multiome | 81 | |
| scReg2: integrate RNA and ATAC dimention reduction with batch remove | 63 | |
| EpiOne: Generative cartography of single-cell epigenomes | 63 |
