49 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Making bioinformatics fun again | 4.7M | |
| genes and genomes at your fingertips | 21K | |
| CASSIA (Cell type Annotation using Specialized System with Integrated AI) is a P... | 5K | |
| The core library of the Napitsu project supporting the creation, transformation,... | 4K | |
| 3K | ||
| Lightweight, object-oriented backend bioinformatics package which simplifies int... | 2K | |
| ScanPy Extension and kwarg Preferences | 2K | |
| 1K | ||
| CETSA analysis and deep learning toolkit for binding curves, hit calling, and pr... | 1K | |
| A tool to download specified image data from the Human Protein Atlas website usi... | 1K | |
| Analyze network colocalization of gene sets | 988 | |
| 836 | ||
| Analytical framework for BS-seq data comparison and visualization | 830 | |
| Python package for integrating and analyzing multiple single-cell datasets (A Py... | 813 | |
| A tool to download AP-MS data for Cell Maps pipeline | 636 | |
| 590 | ||
| Python package for inference of the gene regulatory network and the boolean netw... | 560 | |
| A network-based approach for exon set enrichment | 538 | |
| An approch for interpreting disease-associated human variants using single-cell ... | 512 | |
| Python package for gene regulatory networks (GRN) using Bayesian network | 480 | |
| Tool to stratify GO terms based on first significant parent | 435 | |
| Hassle-free RNA-seq alignment | 352 | |
| Network Assisted Genomic Association | 346 | |
| mirror of matt wall's miner3 | 306 | |
| A bioinformatics pipeline for basecalling ONT NGS Data. | 285 | |
| Single-cell classification and analysis, optimized for embryonic and fetal devel... | 269 | |
| A collection of modules for executing MVP Workflows | 266 | |
| Bioinformatics utilities | 241 | |
| Package for standardization and evaluation of biological networks | 220 | |
| Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cel... | 217 | |
| Unified RNA Analysis Toolkit - ML-powered RNA sequence analysis and structure pr... | 205 | |
| Package for the scSpecies workflow. | 200 | |
| Heimdall: A Comprehensive Paradigm for Evaluating Single-Cell Representations wi... | 198 | |
| [UNSTABLE] A package of custom tools to tackle bioinformatic projects. | 193 | |
| A comprehensive Python package for retrieving detailed gene information from mul... | 187 | |
| A python-based transcriptomics library | 182 | |
| OncoCyrix: a modular Scanpy-based pipeline for single-sample 10x scRNA-seq cance... | 162 | |
| An easy to use and comprehensive python package which aids in the analysis and v... | 147 | |
| An ODE-based Python toolkit for modeling phosphorylation dynamics - parameter es... | 145 | |
| analyzing the co-authorship network of researchers in the field of biology | 143 | |
| A python package for modeling GSL metabolism and performing transcriptomic integ... | 139 | |
| Del2Phen, a tool to predict phenotypes associated with copy-number variants base... | 135 | |
| An enhancer for PaperBlast | 124 | |
| DeepSVP: Integration of Genomics and Phenotypes forStructural Variant Prioritiza... | 110 | |
| Convert multiple files into quantms.io format | 102 | |
| Reverse Distillation for Protein Language Models | 89 | |
| Target prioritization using network representation learning | 85 | |
| for enrichment and network analysis given gene list | 76 | |
| C-MAP: Cleavage Motif Analysis Pipeline | 67 |
