323 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Spectral analysis, simulation and subtomogram averaging of heterogenic cylindric... | 22K | |
| Tool for segmentation in bioimaging | 17K | |
| Interactive visualization of spatial omics data | 15K | |
| Linking napari layers with Matplotlib plots | 9K | |
| Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. ... | 9K | |
| A napari plugin for interactive Segment Anything Model 3 (SAM3) segmentation usi... | 8K | |
| Segmentation tool for biological cells of irregular size and shape in 3D and 2D. | 8K | |
| Local AI and deterministic workbench for napari image-analysis workflows | 6K | |
| Browse your OMERO database from within napari. | 6K | |
| a napari plugin for labeling and refining keypoint data within DeepLabCut projec... | 5K | |
| Utilities for processing mbo datasets, including data-processing and graphical-u... | 5K | |
| Attaches a customizable Tools menu to napari | 5K | |
| Read and write files from the BrainGlobe neuroanatomy suite | 5K | |
| Axon/Myelin segmentation using Deep Learning | 4K | |
| Data structures for managing image processing workflows in napari | 4K | |
| A toolbox for annotating objects one by one in nD | 4K | |
| A pocket calculator like interface to image processing in napari | 4K | |
| A napari plugin for zarr backed OME-NGFF images | 4K | |
| A napari plugin for drawing PALM RoboSoftware elements using StarDist segmentati... | 4K | |
| A python package and graphical user interface to perform single-cell analysis fo... | 3K | |
| visualize histology images with umap | 3K | |
| Add your description here | 3K | |
| A napari plugin for dynamically displaying orthogonal views and syncing events b... | 3K | |
| Python package for analysis and visualization of functional ultrasound imaging d... | 3K | |
| A napari plugin for making animations | 3K | |
| A napari plugin to render BrainGlobe atlases and associated data as layers. | 3K | |
| A microscopy image processing toolkit. | 3K | |
| A plugin to read, write, and manage image data in napari | 3K | |
| A napari plugin for counting organoids from brightfield microscopy images with d... | 2K | |
| Segmentation of anatomical structures in a common coordinate space | 2K | |
| Napari plugin for spatial RNA quantification | 2K | |
| GPU-accelerated image processing in napari using OpenCL | 2K | |
| An application for interactive for tracking with motile | 2K | |
| Mange command options in python and create QWidgets for them. | 2K | |
| A 3D interactivity toolbox for napari | 2K | |
| Single molecule tracking in plugin for Napari | 2K | |
| An interactive classifier plugin to use with label images and feature measuremen... | 2K | |
| A Napari plugin for tomographic reconstruction using the ASTRA Toolbox, with opt... | 2K | |
| Minimal app for big fish. | 2K | |
| Package introducing the InSituPy framework to analyze single-cell spatial transc... | 2K | |
| A napari viewer which reads stpt images as zarr files | 2K | |
| Particle selection tool for cryo-em | 2K | |
| Automatic micro-tubules cut detector. | 2K | |
| Allow to view a dataset image by image and edit their labels | 2K | |
| Implementation of U-Net, U-Net++, and 3D U-Net in PyTorch for analysis of bio-im... | 2K | |
| A Python package for utilities and classes related to the file I/O, dataset reco... | 2K | |
| Segmentation of anatomical structures in a common coordinate space | 2K | |
| Automated mouse atlas propagation | 2K | |
| GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled ob... | 2K | |
| Quickly find the affine matrix mapping one image to another using manual corresp... | 2K |
