26 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Python modules to work with large multiresolution images. | 210K | |
| A BioIO reader plugin for reading ND2 images. | 8K | |
| Plant phenotyping with image analysis | 6K | |
| Single Particle Tracking from video. | 3K | |
| A collection of tools for painting super-resolution images | 3K | |
| A Python-based tool for parallelized conversion of image datasets from various f... | 3K | |
| Large image tiling and stitching library for scaling Python functions to arbitra... | 2K | |
| A plugin to navigate a .nd2 file (confocal movie) and annotate nuclei using elli... | 2K | |
| Neurotorch is a tool designed to extract regions of synaptic activity in neurons... | 2K | |
| A plugin for batch processing of confocal and whole-slide microscopy images of b... | 1K | |
| A napari plugin for Nikon ND2 spectral imaging workflows, including ND2-to-OME-Z... | 1K | |
| Automated organelle segmentation, tracking, and hierarchical feature extraction ... | 1K | |
| Segment organoids and measure intensities | 959 | |
| my personal library | 649 | |
| Commonly used Python code at the Center for Advanced Light Microscopy | 644 | |
| Python package for processing large-scale microscopy datasets generated by Arcad... | 613 | |
| MultiCellPose: segmentation and analysis toolkit for multimodal microscopy | 542 | |
| 296 | ||
| Convert nd2 to zarr | 266 | |
| A collection of tools and helpers to work with the JetRaw compression libraries. | 265 | |
| Analysis of videos of cells with respect to their change in brightness over time... | 240 | |
| Comprehensive spatial transcriptomics analysis library with advanced segmentatio... | 237 | |
| A lightweight bioformats-like library for Python | 222 | |
| Tools for working with single-molecule localization data. | 171 | |
| Locate bacteria in CLSM obtained infected bone tissue images | 149 | |
| Computational workflows to assess phototoxicity in live-cell microscopy experime... | 56 |
