31 dependents
| Package | Description | Downloads/month |
|---|---|---|
| INDRA (Integrated Network and Dynamical Reasoning Assembler) is an automated mod... | 8K | |
| 📛 A Python package for using ontologies, terminologies, and biomedical nomenclat... | 8K | |
| CPG workflows for Hail Batch | 5K | |
| Sherpa knowledge import plugins | 5K | |
| CIViC variant knowledgebase analysis toolkit. | 4K | |
| FlyBase Downloads | 3K | |
| Utilities for packaging PDB chemical reference data | 2K | |
| Biomedical Term Annotator | 2K | |
| Topyfic: Reproducible latent dirichlet allocation (LDA) using leiden clustering ... | 2K | |
| Filter VCF/BCF files with Python expressions. | 1K | |
| A python implementation for building chemically informed distance trees | 1K | |
| xi-mzidentml-converter uses pyteomics (https://pyteomics.readthedocs.io/en/lates... | 1K | |
| A unifying representation of single cell expression profiles that quantifies sim... | 1K | |
| Comprehensive Python Module for Protein Data Management: Designed for streamline... | 1K | |
| Analyze network colocalization of gene sets | 988 | |
| A Lipidomics Database Explorer Package | 904 | |
| Gene finding pipeline for selenoprotein and selenocysteine machinery | 808 | |
| Phenotype comparison tools using semantic similarity | 712 | |
| Gene Ontology Provider | 674 | |
| A python library to fetch metadata from NCBI and MetaSRA for a list of NCBI acce... | 583 | |
| A machine learning tool to classify complex datasets based on ontologies | 554 | |
| mzidentml-reader uses pyteomics (https://pyteomics.readthedocs.io/en/latest/inde... | 544 | |
| OpenOmics provides a bioinformatics API and web-app platform integrate and visua... | 393 | |
| BENchmarking Transformer-Obtained Single-Cell embeddings | 373 | |
| An easy-to-use package for all your biomedical entity linking needs. | 275 | |
| Store and parse identifiers or accession numbers defined by various biological d... | 231 | |
| Package for standardization and evaluation of biological networks | 220 | |
| Aggregation of functionalities needed in multiple projects | 169 | |
| 123 | ||
| A Bio2BEL package for converting the Gene Ontology (GO) to BEL | 96 | |
| Comprehensive Python Module for Protein Data Management: Designed for streamline... | 69 |
