51 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Python helpers for G4X. | 430K | |
| An open and interoperable data framework for spatial omics data | 105K | |
| Definitions for a collaborative cryoET annotation tool. | 6K | |
| Local AI and deterministic workbench for napari image-analysis workflows | 6K | |
| Technology-invariant pipeline for spatial omics analysis that scales to millions... | 6K | |
| Registration and fusion of large imaging datasets in 2D and 3D. | 5K | |
| A napari plugin for zarr backed OME-NGFF images | 4K | |
| Package to support the research of LIOM. | 4K | |
| Utilities for working with ZARR files and AIND metadata | 4K | |
| Package for working with OME-Zarr and NIFTI images in a unified manner, with a f... | 2K | |
| Collection of representation learning models, techniques, callbacks, utils, used... | 2K | |
| python3 physicell data output loader. | 2K | |
| QIM tools and user interfaces for volumetric imaging | 2K | |
| High-Content Screening image processing engine with native GPU support | 2K | |
| A Python package for utilities and classes related to the file I/O, dataset reco... | 2K | |
| Plugin for exporting images in zarr format. | 2K | |
| Large-scale multi-hypotheses cell tracking | 2K | |
| Single-cell spatial omics analysis that makes you happy! | 1K | |
| A plugin for batch processing of confocal and whole-slide microscopy images of b... | 1K | |
| A napari plugin for Nikon ND2 spectral imaging workflows, including ND2-to-OME-Z... | 1K | |
| Omega: an autonomous LLM-powered agent for conversational image processing and a... | 1K | |
| Python package for interactive visualization of imaging-based spatial transcript... | 1K | |
| Tools used at FMI-FAIM for Image Processing and Analysis. | 1K | |
| Multi-view light sheet microscopy image processing pipeline | 1K | |
| Framework-agnostic multi-backend storage abstraction for ML and scientific compu... | 953 | |
| scPortrait is a scalable toolkit to generate single-cell representations from ra... | 870 | |
| Standalone Python CLI wrapper around Trackastra for segmentation and tracking on... | 824 | |
| Active learning tools for fine-tuning ML models | 748 | |
| a napari plugin for TIFF-based 2D and 3D U-Net segmentation workflows. | 696 | |
| A GUI for (imaging) mass cyometry analysis predominantly based on the popular St... | 644 | |
| Atlas stitching widget for ZEISS Volutome and JEOL EM atlas tile workflows | 609 | |
| A plugin to browse OME-Zarr plates by conditions and load images, labels and fea... | 594 | |
| Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in... | 588 | |
| A collection of custom fractal tasks. | 552 | |
| A Python toolkit for quantitative and visual quality control of segmentation and... | 529 | |
| Fractal tasks for the Opera/Operetta microscope and drug profiling | 485 | |
| napari plugin for iteratively improving unet-watershed segmentation | 423 | |
| Multidimensional data visualization for genomics | 417 | |
| Comprehensive package for analysis of Optical Pooled Screens (OPS) for biologica... | 385 | |
| Python Calcium Recording Analysis and Inference Toolbox | 310 | |
| 290 | ||
| A simple Python library for handling correlative microscopy datasets | 244 | |
| Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing an... | 232 | |
| A package that generates neuroglancer links for ome-zarr files. | 226 | |
| Human in the loop 2d cell migration analysis | 219 | |
| A napari plugin for stitching large tiled 3D imaging datasets | 200 | |
| A tool for creating and visualizing n-dimensional microscopy images. | 199 | |
| Spatial omics analysis tools for cell/gene clustering from a standard region | 192 | |
| Convert OME-Zarr files to TMAP format | 183 | |
| Generated from aind-library-template | 135 |
