22 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Library for munging data files from ClusPro/FTMap/etc. | 1K | |
| Personal protein processing tool collections | 868 | |
| Matcha: Multi-Stage Riemannian Flow Matching for Accurate and Physically Valid M... | 790 | |
| Ancestral sequence reconstruction using a tree structured Ornstein Uhlenbeck var... | 766 | |
| Comprehensive benchmarking of protein-ligand structure prediction methods | 650 | |
| Flow Gym | 618 | |
| 3D visualization of proteins | 577 | |
| a pip installable version of LigandMPNN with pre-trained models included | 430 | |
| A Python package to calculate, visualize and analyze correlation maps of protein... | 374 | |
| A comprehensive accurate assessment approach for deep learning based molecular d... | 297 | |
| A drop-in replacement for Rosetta Relax | 289 | |
| Calculates single residue frustration, and mutational frustration of proteins. | 274 | |
| fpocketR is a modified version of fpocket 4.0 and is optimized for finding, char... | 254 | |
| Python program, based on Prody, for pathogenicity prediction of human missense v... | 230 | |
| Diffusion Gym: Library for reward adaptation of any pre-trained diffusion or flo... | 190 | |
| Web-based MD simulation pipeline with AMBER, ESMFold, docking, and PLUMED | 188 | |
| A library of utilities for working with proteins | 186 | |
| 111 | ||
| Monte Carlo Protein Energy Landscape Exploration (PELE) coupled with Markov Stat... | 111 | |
| DeepFrag2: A Deep Learning Framework for Fragment-Based Lead Optimization | 109 | |
| PySteMoDA | 108 | |
| Comprehensive ensembling of protein-ligand structure and affinity prediction met... | 85 |
