21 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A framework for state-of-the-art pre-trained bio foundation models on genomics a... | 7K | |
| 3K | ||
| Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.... | 3K | |
| cnvturbo: A high-performance scRNA-seq CNV inference toolkit with R inferCNV-com... | 1K | |
| A python package that implements gene-based scoring system, association analysis... | 1K | |
| Enrichment analysis and visualisation toolkit for KEGG pathways | 761 | |
| Utility functions for spatial RNA analysis, built in python for compatibility wi... | 760 | |
| Feature-rich Python implementation of the tximport package for gene count estima... | 660 | |
| 441 | ||
| python implementation of the PAGE algorithm | 434 | |
| H2M is a Python pipeline for precise modeling of human variants in the mouse gen... | 233 | |
| [UNSTABLE] A package of custom tools to tackle bioinformatic projects. | 193 | |
| A MCP server for Biomart | 190 | |
| Map single-cell transcriptomes to copy number evolutionary trees. | 187 | |
| GWAS summary QC plotting tool (QQ & Manhattan plots) | 180 | |
| A collection of SBM utility functions | 170 | |
| 🧬Genomes to proteins, multi-level visualization library | 150 | |
| A MCP server for Biomart | 91 | |
| single-cell latent diffusion model | 85 | |
| A MCP server for Biomart | 80 | |
| Utility functions for spatial RNA analysis, built in python for compatibility wi... | 3 |
