148 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A standardized configuration object for reference genome assemblies | 208K | |
| Refgenie creates a standardized folder structure for reference genome files and ... | 123K | |
| GFF and GTF file manipulation and interconversion | 96K | |
| BiNgo Genome Viewer — a lightweight browser-based genomics viewer | 38K | |
| JSON-based FON (Feature Object Notation) format and tools to simplify genomic an... | 30K | |
| genes and genomes at your fingertips | 21K | |
| A cool place to store your Hi-C | 17K | |
| exprmat: Routines for expression matrices | 15K | |
| Implementation of Enformer, Deepmind's attention network for predicting gene exp... | 12K | |
| Biological sequence analysis for the modern age. | 8K | |
| A lightweight reimplementation of some of the algorithms in the MEME suite in Py... | 7K | |
| Easily gather data from across NCBI databases | 7K | |
| Single-cell epigenomics analysis tools | 7K | |
| Ultima Genomics core bioinfo utils | 7K | |
| Package to load genes from GENCODE GTF files | 6K | |
| CPG workflows for Hail Batch | 5K | |
| Testing with PCA projected Concept Activation Vectors | 5K | |
| Provide ready-to-use dataloader for deep learning models | 5K | |
| Clodius is a tool for breaking up large data sets into smaller tiles that can su... | 4K | |
| Copy number variant detection from targeted DNA sequencing | 4K | |
| Read-based phasing of genomic variants, also called haplotype assembly | 4K | |
| python module to plot beautiful and highly customizable genome browser tracks | 4K | |
| A deep learning-based tool to identify splice variants | 3K | |
| A cancer immunotherapy tools suite | 3K | |
| A Python library for genetic mutations | 3K | |
| 3K | ||
| Ultima Genomics FREEC | 2K | |
| Transformers for Transcripts | 2K | |
| Transcript discovery and quantification with long RNA reads (Nanopores and PacBi... | 2K | |
| Data intensive science for everyone. | 2K | |
| Centromere statistics toolkit | 2K | |
| A command-line tool for reading SAM/BAM files and converted them directly to big... | 2K | |
| Filtering workflow for identifying mis-annotations in genome annotations using a... | 2K | |
| Tools to process PacBio sequencing data at molecule level | 2K | |
| pytoda - PaccMann PyTorch Dataset Classes. Read the docs: https://paccmann.githu... | 1K | |
| Generate a PanGenome given a set of genomes | 1K | |
| SnapATAC2-scooby: Single-cell epigenomics analysis pipeline with functionality f... | 1K | |
| Targeted ortholog search for miRNAs | 1K | |
| TFit : Assessing the combinatorial potential of Transcription Factors in Gene Re... | 1K | |
| Demographic inference from Ancestral Recombination Graphs. | 1K | |
| A tool for the recovery of unassembled telomeres from soft-clipped read alignme... | 1K | |
| sequence | 1K | |
| DNA Sequence Visualization for Humans. | 1K | |
| Web server for U-Probe | 1K | |
| Aligning a large number of protein sequences to a genome | 1K | |
| AIDO.ModelGenerator is a software stack powering the development of an AI-driven... | 1K | |
| RNA modifications detection from Nanopore dRNA-Seq data | 1K | |
| UTRme | 951 | |
| Single-cell multiomics data analysis | 947 | |
| A Python library for genetic mutations | 940 |
