51 dependents
| Package | Description | Downloads/month |
|---|---|---|
| exprmat: Routines for expression matrices | 15K | |
| Pipeline components for real-time phylodynamic analysis | 6K | |
| Utilities for analysis of adaptive immune receptor repertoire (AIRR) data | 5K | |
| Collection of scripts and tools for MGnify pipelines | 5K | |
| Genomic Language Model Mitigates Chimera Artifacts in Nanopore Direct RNA Sequen... | 4K | |
| Retrieve annotated intron sequences from an annotated genome and classify them a... | 2K | |
| Identifying methlyation motifs in nanopore data | 2K | |
| A command-line tool and library to process and analyze sequencing data from Mole... | 2K | |
| Pure-Python DADA2 — exact amplicon sequence variant inference from amplicon sequ... | 2K | |
| A fast and accurate binning refinement tool to constructs high quality MAGs from... | 1K | |
| Bioinformatics tools package with Python. | 1K | |
| Metagenomic binning based on Hi-C data | 1K | |
| busco analysis for gene predictions | 936 | |
| AMPtk: amplicon tool kit | 681 | |
| Funannotate2: eukarytoic genome annotation pipeline | 644 | |
| To use Evo2 easily | 593 | |
| A language model enables accurate structural variant detection in whole-genome a... | 560 | |
| RNA virus analysis toolkit | 492 | |
| A PrIMEr infereNce TOolkit to facilitate large-scale calling of metabarcoding am... | 414 | |
| helixerlite: simplified genome annotation with Helixer | 396 | |
| A python package to process UMI tagged mixed amplicon metabarcoding data. | 371 | |
| Add your description here | 350 | |
| ConoDictor predicts conopeptides superfamily using generalized profiles and hidd... | 343 | |
| BITS: miscellaneous BioInformatics ToolS | 335 | |
| A CLI tool for dereplicating and filtering viral contigs | 275 | |
| delfies is a tool for the detection of DNA Elimination breakpoints | 270 | |
| A package for filtering the output of ProsperousPlus. | 249 | |
| Transposable Element Repeat Result classifIER | 233 | |
| Jaeger is a quick and precise tool for detecting phages in sequence assemblies. | 228 | |
| A database to quickly read and write DNA sequence data in numerical form. | 220 | |
| 189 | ||
| Visualise and analyse nanopore (ONT) raw signals | 188 | |
| Python package for generation of protein sequences and evolutionary alignments v... | 175 | |
| QUIck Clonal Analysis Toolkit - quicat | 173 | |
| Oligopool Calculator - Automated design and analysis of oligo pool libraries | 165 | |
| 162 | ||
| UMI de-duplication using mclUMI | 155 | |
| Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler... | 155 | |
| Find housekeeping genes in prokaryotic (meta)genomic data | 155 | |
| Profiling Germline Adaptive Immune Receptor Repertoire with gAIRR Suite | 143 | |
| himut: single molecule somatic single-base substitution detection using PacBio C... | 137 | |
| Efficient variant screening of RNA-seq and DNA-seq data using k-mer-based alignm... | 125 | |
| CRISPR gRNA design pipeline for SpCas9 (NGG PAM) | 108 | |
| Oxford Nanopore Technologies duplex pipeline scripts for guppy | 108 | |
| 103 | ||
| Deep learning utilities for genomics with PyTorch | 81 | |
| Whats in my fastq file? | 75 | |
| Deep learning utilities for genomics | 63 | |
| Fast and memory-efficient sampling of DNA-Seq or RNA-seq fastq data with or with... | 63 | |
| Test repository. | 60 |
