46 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Terminal plasmid map viewer and editor | 15K | |
| The Complete Python Antibody Library | 3K | |
| Feature-aware Directed OrtholoG search | 3K | |
| Rapid & standardized annotation of bacterial genomes, MAGs & plasmids | 3K | |
| Systematic search of all known anti-phage systems. | 2K | |
| description | 2K | |
| Run_dbcan V5 | 1K | |
| Phage bioinformatics utilities (seqclust runner and friends). | 1K | |
| Framework for the analysis of long read transcriptome sequencing data | 1K | |
| symbiont classifier | 961 | |
| busco analysis for gene predictions | 936 | |
| Loci Visualisation Tool. | 890 | |
| Map profile HMMs of transposon termini to genomic sequences for annotation of cr... | 787 | |
| 779 | ||
| Fast phage annotation tool | 754 | |
| Search calcyanin in a set of amino acid sequences | 695 | |
| Cython bindings and Python interface to Infernal 1.1. | 688 | |
| Funannotate2: eukarytoic genome annotation pipeline | 644 | |
| Python code for versatile Functional Ontology Assignments for Metagenomes search... | 634 | |
| Feature extraction library for sequences and structures | 582 | |
| 562 | ||
| GEne Cluster prediction with COnditional random fields. | 526 | |
| CheckU: UNI56 marker completeness profiling for microbial genomes. | 502 | |
| RNA virus analysis toolkit | 492 | |
| Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In S... | 469 | |
| Parser for antiSMASH output GenBank files. | 417 | |
| Python implementation of barrnap (Bacterial ribosomal RNA predictor) | 366 | |
| A highly scalable, user-interactive tool for the large scale analysis of Biosynt... | 347 | |
| ConoDictor predicts conopeptides superfamily using generalized profiles and hidd... | 343 | |
| Transfer feature annotations from a reference genome to a de novo assembled one | 332 | |
| A user-friendly pipeline for viral diversity analysis and characterization. | 301 | |
| Run_dbcan V5 | 287 | |
| Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary ... | 275 | |
| A command-line tool for profiling CAZyme abundances in metagenomic datasets. | 260 | |
| FetchMGs extracts the 40 marker genes from genomes and metagenomes in an easy an... | 260 | |
| Predict enzymatic impact on biogeochemical cycles from proteomes. | 250 | |
| Fast implementation of KofamScan optimized for high-memory systems using PyHMMER | 240 | |
| Set of methods to parse, annotate, and calculate features of TCR structures | 237 | |
| 233 | ||
| Fast implementation of HMMSEARCH optimized for high-memory systems using PyHMMER | 229 | |
| Species tree construction from marker gene phylogenies | 216 | |
| Translation-guided nucleotide alignment for coding sequences | 184 | |
| Antibody Numbering and Receptor ClassIfication | 177 | |
| Find housekeeping genes in prokaryotic (meta)genomic data | 155 | |
| A rapid estimator for amino acid identity between genomes. | 136 | |
| 84 |
