33 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Build a partitioned pangenome graph from microbial genomes | 8K | |
| A Pyrodigal extension to predict genes in giant viruses and viruses with alterna... | 3K | |
| Package to extract Unannotated Regions from prokaryotic genomes report coding an... | 3K | |
| Rapid & standardized annotation of bacterial genomes, MAGs & plasmids | 3K | |
| Systematic search of all known anti-phage systems. | 2K | |
| BSR-Based Allele Calling Algorithm | 2K | |
| A fast and accurate binning refinement tool to constructs high quality MAGs from... | 1K | |
| Run_dbcan V5 | 1K | |
| Phage bioinformatics utilities (seqclust runner and friends). | 1K | |
| Toolbox for comparative genomics of MAGs | 1K | |
| symbiont classifier | 961 | |
| 779 | ||
| Fast phage annotation tool | 754 | |
| Reorients assembled microbial sequences | 731 | |
| Python code for versatile Functional Ontology Assignments for Metagenomes search... | 634 | |
| GEne Cluster prediction with COnditional random fields. | 526 | |
| CheckU: UNI56 marker completeness profiling for microbial genomes. | 502 | |
| Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In S... | 469 | |
| Transfer feature annotations from a reference genome to a de novo assembled one | 332 | |
| A Pyrodigal extension to predict genes in RNA viruses with the standard and alte... | 329 | |
| Run_dbcan V5 | 287 | |
| Program to measure the irregularity of the codon usage for a single genomic regi... | 278 | |
| Automated discovery and curation of Auxiliary Metabolic Genes (AMGs), Auxiliary ... | 275 | |
| FetchMGs extracts the 40 marker genes from genomes and metagenomes in an easy an... | 260 | |
| A Python library for GenomeOcean inference and fine-tuning. | 233 | |
| 233 | ||
| Pyrodigal cli optimized for metagenomic data | 186 | |
| Targeted Detection and Reconstruction of Plasmids | 178 | |
| Common search engine for similarity based typing applications | 174 | |
| Find housekeeping genes in prokaryotic (meta)genomic data | 155 | |
| A rapid estimator for amino acid identity between genomes. | 136 | |
| Fast Python library for plasmid annotation and makeability scoring | 100 | |
| 84 |
