65 dependents
| Package | Description | Downloads/month |
|---|---|---|
| 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs) in Python | 330K | |
| 📮 An integrative registry of biological databases, ontologies, and nomenclatures... | 231K | |
| 🪝 What's the latest version for each database? | 187K | |
| Ontology Access Kit: Python library for common ontology operations over a variet... | 52K | |
| An opinionated implementation of a simple subset of SSSOM, based on Pydantic | 47K | |
| 🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPort... | 38K | |
| 🎡 Unified access to OLS instances like from the EBI and TIB | 32K | |
| 🤖 A Python library for learning and evaluating knowledge graph embeddings | 22K | |
| Some useful RDKit functions | 20K | |
| A client to the FAIRsharing API | 9K | |
| Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that ... | 9K | |
| 📛 A Python package for using ontologies, terminologies, and biomedical nomenclat... | 8K | |
| DECIMER Image Transformer is a deep-learning-based tool designed for automated r... | 7K | |
| A simple standard for sharing literal mappings (SSSLM) | 7K | |
| Python package for interacting with Monarch Initiative knowledge graph | 7K | |
| linkml-store | 6K | |
| A tool for automated uploading and version management of scientific data to Zeno... | 5K | |
| Automate downloading and processing PubMed in bulk | 4K | |
| Write reproducible code for getting and processing ChEMBL | 4K | |
| Grounding of biomedical named entities with contextual disambiguation | 4K | |
| A data model and client for QuickStatements (for Wikidata) | 4K | |
| Don't worry about DrugBank licensing - write code that knows how to download it ... | 3K | |
| Prediction and curation of semantic mappings in SSSOM | 2K | |
| A Pydantic model for OBO Graph JSON | 2K | |
| 🏷️ Unified access to biomedical ontologies | 2K | |
| 2024 Capstone project | 2K | |
| GO CAM Data Model (Python) | 2K | |
| Download and process ClinicalTrials.gov | 2K | |
| ⚗️ An all-in-one solution for chemical property retrieval from PubChem. | 2K | |
| Automatically download data from NIH RePORTER | 2K | |
| A Python wrapper around the ROBOT ontology tool | 2K | |
| STOUT V2.0 - Smiles TO iUpac Translator Version 2.0 | 2K | |
| Python wrapper for Mold2 descriptors | 1K | |
| A collection of scripts to handle the Papyrus bioactivity dataset | 1K | |
| Grounding for biomedical entities with contextual disambiguation | 1K | |
| ontology_loader | 1K | |
| 🛣️ Semantic Mapping Reasoning Assembler (SeMRA): tooling for semantic mappings | 841 | |
| A Python package implementing the DALIA Interchange Format (DIF) for open educat... | 802 | |
| A network based gene classification library to generate genome wide predictions ... | 628 | |
| llm-change-agent | 597 | |
| Generative materials benchmarking metrics, inspired by guacamol and CDVAE. | 562 | |
| (DRExM³L) Drug REpurposing using and eXplainable Machine Learning and Mechanisti... | 451 | |
| mCodeGPT | 448 | |
| forayer is a library of first aid utilities for knowledge graph exploration with... | 419 | |
| A Python client to OpenCitations | 392 | |
| Reproducibly download the latest version of DepMap datasets | 329 | |
| Get ORCID in bulk, free it from XML, and semantically enrich it | 317 | |
| Classify documents in PubMed | 294 | |
| 👁️🗨️ Scientists often do the same bad stuff. Automate giving deterministic feed... | 292 | |
| A framework for calculating descriptors for polymers | 259 |
