94 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Python library for processing (tandem) mass spectrometry data and for computing ... | 47K | |
| MS²PIP: Fast and accurate peptide spectrum prediction for multiple fragmentation... | 11K | |
| Python package for efficient mass spectrometry data processing and visualization | 8K | |
| A library for deisotoping and charge state deconvolution of complex mass spectra | 7K | |
| Infrastructure of AlphaX ecosystem | 7K | |
| Bioinformatics IO and workflow utilities with Rust-accelerated backends. | 6K | |
| Common utilities for parsing and handling peptide-spectrum matches and search en... | 6K | |
| A feature detection LC-MS1 spectra. | 4K | |
| A deep learning toolkit for mass spectrometry | 4K | |
| A library for QC report based on MultiQC framework | 3K | |
| The Mass Spec Query Language (MassQL) is a domain specific language meant to be ... | 3K | |
| Deep learning framework for proteomics | 3K | |
| An open-source Python package to unify raw MS data accession and storage. | 3K | |
| A utility for validation of peptide identification results in proteomics using a... | 2K | |
| Accurate and fast data processing for metabolomics | 2K | |
| Modular and user-friendly platform for AI-assisted rescoring of peptide identifi... | 2K | |
| Python Package for the downstream analysis of mass-spectrometry-based proteomics... | 2K | |
| A modular, python-based framework for mass spectrometry. Powered by nbdev. | 2K | |
| protein turnover pipeline | 2K | |
| GlycoGenius is an all-in-one solution for data analysis of glycomics data. | 2K | |
| Universal Deconvolution of Mass and Ion Mobility Spectra | 2K | |
| A python package to process protein cross-linking data. | 2K | |
| De novo peptide sequencing with InstaNovo: Accurate, database-free peptide ident... | 2K | |
| Common library for crosslinking mass spectrometry tools | 1K | |
| Cython Implementations of Common Pyteomics Functions | 1K | |
| Provides an intermediate layer between mass spec data and ML applications, such ... | 1K | |
| Accessory GUI for Glycogenius | 1K | |
| A Toolbox for Proteomic Analyses and Data Visualization | 1K | |
| Python library for large-scale targeted metabolomics. | 1K | |
| Software for performing compound identification on variety of mass spectrometry ... | 1K | |
| This repository attempts to implement a neural net that leverages the transforme... | 1K | |
| MHCBooster: An AI-powered Software to Improve Immunopeptidome Identification fro... | 1K | |
| xi-mzidentml-converter uses pyteomics (https://pyteomics.readthedocs.io/en/lates... | 1K | |
| 3DMolMS: prediction of tandem mass spectra from 3D molecular conformations | 1K | |
| Mascope's public library, containing tools for spectra postprocessing. | 981 | |
| A proteomics search engine for LC-MS1 spectra. | 976 | |
| Predicting glycan structure from LC-MS/MS data | 962 | |
| Utility functions for proteomics data analysis | 925 | |
| IO related functionalities for oktoberfest. | 852 | |
| 822 | ||
| Python tools for proteogenomics analysis toolkit | 796 | |
| Helping to integrate Spectral Predictors and Rescoring. | 793 | |
| Data processing/analysis functionality of metabolomics dashboard FERMO | 789 | |
| A python module for fast post translational modification localization. | 764 | |
| A python framework for microbial natural products data mining by integrating gen... | 738 | |
| Glycan and Glycopeptide Mass Spectrometry Database Search Tool | 680 | |
| iDeepLC: A deep Learning-based retention time predictor for unseen modified pept... | 623 | |
| MS-MINT is a Python application for processing, analyzing, and visualizing large... | 577 | |
| Similarity-based Isobaric MS2 Identification Transfer | 558 | |
| ModiFinder package | 554 |
