163 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Building a single-cell transcriptome-based coordinate system | 49K | |
| Community Discovery Library | 16K | |
| Generative additive model for single cell perturbation v2 | 6K | |
| Learning multi-omics perturbation language | 6K | |
| [NeurIPS'24] HippoRAG is a novel RAG framework inspired by human long-term memor... | 5K | |
| Models for probabilistic reasoning | 3K | |
| Sematic representation learning for single cell perturbation | 3K | |
| Behavioral sequencing and phenotyping with lightweight task specific adaptation | 3K | |
| visualize histology images with umap | 3K | |
| A toolbox for analyzing and processing mobility data. | 3K | |
| a scalable python suite for tree inference and advanced pseudotime analysis from... | 2K | |
| SimPN (Simulation with Petri Nets) is a package for discrete event simulation in... | 2K | |
| Clustering routines and data structures for entity resolution | 2K | |
| Python implementation of the ElPiGraph algorithm with cpu and gpu support | 2K | |
| 🐍 A python library and snippets for immune repertoire data analysis, based on @a... | 2K | |
| Package to create networks for detecting coordination in social media. | 2K | |
| A command line tool for querying and modeling citation networks from the Astroph... | 2K | |
| Python package for CISS-VAE. | 2K | |
| A tool for sampling networks from the Configuration model | 2K | |
| SpinQ Quantum Software Development Kit | 2K | |
| Framework for creating and analyzing genotype networks from. | 1K | |
| SemiBin: metagenomics binning with self-supervised deep learning | 1K | |
| Network Embedding Experimentation Toolkit - A powerful framework for graph analy... | 1K | |
| NMA: Dendrogram-based model analysis, white-box testing, and adversarial detecti... | 1K | |
| scBOA: scRNA-seq Bayesian Optimization and Analysis pipeline | 1K | |
| minkiPy is a Python package for the differential analysis of gene spatial organi... | 1K | |
| 965 | ||
| Differential abundance and gene expression in single-cell data | 960 | |
| A fast, clean, and composable toolkit for molecular modeling | 951 | |
| Benchmarking library for generative algorithms | 911 | |
| GNN-based learned preconditioner for sparse linear systems | 880 | |
| A library for counting small kmer frequencies in nucleotide sequences. | 865 | |
| ALEPH is a bioinformatics tool for structure interpretation and generation of fr... | 836 | |
| Python package for integrating and analyzing multiple single-cell datasets (A Py... | 813 | |
| A Python Library for Standardized and Reproducible Data Management in Recommende... | 775 | |
| python package implementing the CLICS processing workflow | 769 | |
| Python package for simulating & decoding color code circuits. | 753 | |
| Multi-scale feature analysis of spatial transcriptomics | 747 | |
| The Academic Review Tool (ART) is a package for performing academic reviews and ... | 735 | |
| Analyze Pandas dataframes, and other tabular data (csv), to find subgrops of dat... | 733 | |
| Search calcyanin in a set of amino acid sequences | 695 | |
| Hierarchical Manifold Approximation and Projection | 686 | |
| Basic Informatics and Gene Statistics from Unnormalized Reads, a feature selecti... | 674 | |
| Multi-scale feature analysis of spatial transcriptomics | 656 | |
| (v0.1.0 异步化三大函数，新增三大函数)去除了HippoRAG2中的torch，vllm，甚至openai（以requests和siliconflow a... | 647 | |
| Fast Gephi's ForceAtlas2 graph layout algorithm written in Python for Python | 637 | |
| Rust-powered blockchain analytics with GPU acceleration | 634 | |
| UNAGI: deep generative AI for virtual disease and unsuperivsed in-silico perturb... | 627 | |
| A Python package for unsupervised analysis of spatial (prote)omics data. | 613 | |
| Python tools for Respondent-Driven Sampling (RDS) analysis | 611 |
