70 dependents
| Package | Description | Downloads/month |
|---|---|---|
| COBRApy is a package for constraint-based modeling of metabolic networks. | 62K | |
| C++ basecode and python scripting interface | 29K | |
| Tellurium: An biological modeling environment for Python | 10K | |
| A package to build metabolic models | 9K | |
| Python package for working with PEtab files | 8K | |
| A simple CLI for BioNetGen | 7K | |
| High-performance sensitivity analysis for large ordinary differential equation m... | 6K | |
| SBML MathML ↔ SymPy | 5K | |
| Stoichiometric metabolic modelling | 5K | |
| Python utilities for SBML. | 4K | |
| The core library of the Napitsu project supporting the creation, transformation,... | 4K | |
| A package to build metabolic models | 4K | |
| Python framework for building and analysing protein allocation models | 4K | |
| A package to build metabolic models | 3K | |
| Core implementations of process-bigraph.composite.Process aligning with BioSimul... | 2K | |
| Metabolic Network Tools. | 2K | |
| Converter for logical models: spreadsheets (XLSX, CSV) <--> SBML-qual. | 2K | |
| A simple API for using the Simulation Experiment Description Markup Language (SE... | 2K | |
| ReFramed: metabolic modeling package | 2K | |
| A modular compiler for biological chemical reaction networks | 2K | |
| COPASI biochemical network simulation program via BioSimulators-compliant comman... | 2K | |
| A library for simulation-based parameter optimization | 2K | |
| C++ basecode and python scripting interface | 1K | |
| SBcoyote: An Extensible Python Based Reaction Editor and Viewer. | 1K | |
| Visualize the network of SBML models | 1K | |
| This is the python wrapper for vcell modeling and simulation | 1K | |
| framed: a metabolic modeling package for python | 979 | |
| Analyze and design feedback control for SBML models | 965 | |
| Python library for hAndling metaData of METabolism. | 935 | |
| BioSCRAPE (Bio-circuit Stochastic Single-cell Reaction Analysis and Parameter Es... | 842 | |
| Convert Python ODE systems to SBML (Level 3 Version 2) and PEtab bundles. | 821 | |
| The Meta-Species Oriented Biosystem Syntax in Python (MobsPy) was invented to fa... | 810 | |
| A graphical PEtab editor | 681 | |
| Metabolic flux and concentration estimation based on stable isotope labeling | 650 | |
| PyCoMo is a software package for generating and analysing compartmentalized comm... | 649 | |
| 🧬 - Data management and modeling framework based on EnzymeML. | 648 | |
| Python scripting interface of MOOSE Simulator (https://moose.ncbs.res.in) | 641 | |
| Utilities for Tellurium | 622 | |
| Package for automated generation, simulation and calibration of Resource Balance... | 608 | |
| COYOTE: An Extensible Python Based Reaction Editor and Viewer. | 587 | |
| sbmlsim are utilities for the simulation of SBML models. | 568 | |
| Clean API for reading and writing the SBML Layout extension | 528 | |
| SBOannotator: A Python tool for the automated assignment of Systems Biology Onot... | 504 | |
| Add your description here | 492 | |
| Python Subnet Discovery for Systems Biology | 470 | |
| Analysis of rate laws in reaction networks. | 422 | |
| Python based automated model reduction tool for SBML models | 405 | |
| Quality control tool for the BioModels repository of biochemical models | 391 | |
| Reconstruct metabolic graphs using KEGG database. | 361 | |
| OneModel is a Python package for defining dynamic synthetic biology models easil... | 340 |
