16 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Viola is a flexible and powerful python package designed specifically for analys... | 539 | |
| A package for aligning RNA-seq data without reference biases | 505 | |
| DEPRECATED. This tool has been superseded by https://github.com/griffithlab/pVAC... | 461 | |
| To automate data collection from ICGC database. | 433 | |
| 407 | ||
| Variant effect prediction plugin for Kipoi | 360 | |
| Update your BEAST2 XML to account for constant sites | 334 | |
| Plot allele frequencies in VCF files | 286 | |
| An algorithm for recovering haplotypes from metagenomes | 284 | |
| Convert gVCF into BED | 265 | |
| RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes | 256 | |
| eQTL analysis using region-based aggregation of rare variants. | 113 | |
| A Framework to call Structural Variants from NGS based datasets | 94 | |
| Scripts for NGS data-analysis | 83 | |
| Filter and compare SNPs from multiple VCF files | 61 | |
| Olivar pipeline | 59 |
