42 dependents
| Package | Description | Downloads/month |
|---|---|---|
| a generalist algorithm for cellular segmentation with human-in-the-loop capabili... | 85K | |
| Single Particle Tracking from video. | 3K | |
| MicroLive: An Image Processing Toolkit for Quantifying Live-cell Single-Molecule... | 2K | |
| Common code for the Lenstra lab. | 2K | |
| Automatic detection of epithelial cell events, in particular cell extrusion | 2K | |
| High-Content Screening image processing engine with native GPU support | 2K | |
| A deep learning based tool to segment epithelial tissues. The epyseg GUI can be ... | 2K | |
| Fluorescence spot analysis suite | 1K | |
| Napari plugin to manually correct epithelia segmentation in movies | 1K | |
| Python port of the CellPhe R package for extracting features from time-lapse cel... | 1K | |
| Bacterial segmentation and analysis platform than can inport/export files in mul... | 705 | |
| DNAsight | 638 | |
| Computation of local and signal-close-to-noise calcium activity | 633 | |
| The acia library provides utility functionality for analyzing 2D+t time-lapse im... | 556 | |
| MultiCellPose: segmentation and analysis toolkit for multimodal microscopy | 542 | |
| Generalized Live Cell Segmentation with DINOv2 Pretraining | 518 | |
| A verison of isosegdenoise with strictly defined dependencies for more stable in... | 511 | |
| PyPOLAR is a Python-based app for analyzing polarization-resolved microscopy dat... | 504 | |
| An aggregate of functions I find useful | 485 | |
| Effortless Creation of High-Quality Scientific Figures | 476 | |
| 446 | ||
| A command line tool for converting optical coherence tomography angiography (OCT... | 441 | |
| A morphological analysis tool for feature extraction of stained cell images buil... | 413 | |
| Plugins and associated code for PYME | 391 | |
| The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the ... | 370 | |
| Himena plugin for image processing and analysis | 369 | |
| The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the ... | 368 | |
| 296 | ||
| A tool for segmenting dendrites and dendritic spines. | 272 | |
| A PyQt6-based application for ROI visualization. | 266 | |
| An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-cod... | 260 | |
| This package makes easy to replicate figures and movies from microscopy data fro... | 242 | |
| A ROI Manager Widget with an UI similar to ImageJ | 240 | |
| The napari adaptation of the ImageJ/Fiji plugin AnnotatorJ for easy image annota... | 234 | |
| Install all packages by cgohlke | 227 | |
| Evolve your OpenCV Image Processing filters using Cartesian Genetic Programming | 217 | |
| Image Processing and Analysis toolbox package | 187 | |
| Cracking and packing cellpose gradients to segment and phenotype complex tissues | 170 | |
| A comprehensive Python pipeline for detecting, quantifying, and analyzing FISH (... | 138 | |
| CellPhase: QPI-focused cell segmentation utilities | 120 | |
| CellSium – Cell Simulator for microfluidic microcolonies | 109 | |
| A microscopical image and video platform applied to the analysis of levitating d... | 106 |
