179 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Functions to simplify and standardise antimicrobial resistance (AMR) data analys... | 32K | |
| Convert between AnnData and SingleCellExperiment | 25K | |
| Python package for using R in Python | 3K | |
| pymgcv: Generalized additive models using mgcv, in Python. | 3K | |
| One liner tool to check the quality of your single-cell atlases. | 2K | |
| HAllA: Hierarchical All-against All Association Testing | 2K | |
| Single cell epigenomic clustering based on accessibility pattern | 2K | |
| Integrating transcriptional data to decipher the tumor microenvironment with the... | 2K | |
| MultiGATE single cell | 2K | |
| CLeaning to Analysis: Reproducibility-based Interface for Traits and Exposures | 2K | |
| MODAS: Multi-Omics Data Association Study toolkit | 2K | |
| The maldi_tof_classifier package offers a CLI and Python 3 API for machine learn... | 2K | |
| Robyn is an experimental, AI/ML-powered and open sourced Marketing Mix Modeling ... | 1K | |
| Creating Cartographic Representations of Biological Data | 1K | |
| Optimized version of PIPE-CLIP tool (bug fixed) | 1K | |
| globalsearch is a collection of Python modules and command tools for the Global ... | 1K | |
| 1K | ||
| 1K | ||
| Python package for fCAT, a feature-aware completeness assessment tool | 1K | |
| Framework for quickly creating Dash apps for editing data. | 1K | |
| Python version of NBDCtools | 1K | |
| Python interface to R package `diveMove` | 1K | |
| A lightweight Python library for python utilities for holidays, dates, options a... | 1K | |
| AxSI for MRI data | 934 | |
| ezLMM: Python interface of Linear Mixed Model analysis in R language | 928 | |
| Utility functions for proteomics data analysis | 925 | |
| (Beginning of) library for analyzing ancestral reconstructions of DNA or protein... | 922 | |
| Python port of cMonkey, a machine-learning based method for clustering | 893 | |
| A self-supervised deep learning method for reference-free deconvolution | 846 | |
| Python-first access to R's brms with proper parameter names, ArviZ support, and ... | 827 | |
| Weighted means, variances, quantiles, fixed effects, and more in Polars. | 796 | |
| Orange widgets for bioinformatics processing using R packages. | 787 | |
| :snake: Python client package to access KorAP's web service API. | 786 | |
| A software package for finding differential RNA editing. | 784 | |
| 776 | ||
| A single-cell fully automatic annotation model focusing on the hierarchical stru... | 738 | |
| BIAS toolbox: Structural bias detection for continuous optimization algorithms | 707 | |
| Python wrapper for the OHDSI R packages | 678 | |
| Package for running the CIDR algorithm implemented in R, in python | 646 | |
| SSB Sirius Dash | 642 | |
| 一个非常NB的包 | 641 | |
| Construct, deconstruct, convert, and render R Markdown (Rmd) files | 632 | |
| C3S 451 Event attribution tools library for Python | 629 | |
| package for detecting change in time-series data | 627 | |
| 619 | ||
| Machine Learning with uncertainty quantification and interpretability. | 605 | |
| Meta-simulation framework for evaluating ML method selection | 602 | |
| CausalPipe is a Python wrapper for Causal-Learn and Lavaan tailored for non-expe... | 571 | |
| Extension of Differential Gene Expression testing to handle genome aneuploidy in... | 562 | |
| Category-wide association study (CWAS) (Werling et al., 2018; An et al., 2018) | 555 |
