14 dependents
| Package | Description | Downloads/month |
|---|---|---|
| exprmat: Routines for expression matrices | 14K | |
| Popari: a probabilistic graphical model for integrated spatial transcriptomics a... | 3K | |
| Single cell typing based on cell ontology | 2K | |
| Consensus prediction of cell type labels with popV | 2K | |
| scBOA: scRNA-seq Bayesian Optimization and Analysis pipeline | 1K | |
| Single cell analysis of B cells | 581 | |
| Graph-based age dependency analysis on scVI latent space with Moran's I, ADI, dC... | 570 | |
| STpipe is designed to analyze spatial transcriptomic data. | 423 | |
| CLI for the scanpy package | 407 | |
| Python port of the R monocle3 package (tracks cole-trapnell-lab/monocle3 1.4.26 ... | 398 | |
| Convenient and user-friendly package to streamline common workflows in single-ce... | 394 | |
| Panpipes - multimodal single cell pipelines | 391 | |
| scDistill: Knowledge distillation for single-cell batch correction with covariat... | 211 | |
| A toolkit package of data integration | 119 |
