22 dependents
| Package | Description | Downloads/month |
|---|---|---|
| RNA-seq, QC and differential analysis pipeline | 2K | |
| sequana pipeline to perform parallel fastqc and summarize results with multiqc p... | 2K | |
| A multi-sample variant calling pipeline | 905 | |
| Sequana demultiplexing pipeline | 818 | |
| multiple taxonomic analysis using sequana_taxonomy standalone | 781 | |
| QC on various type of pacbio data | 702 | |
| Workflow to find ribosomal feature in set of FastQ files | 699 | |
| Pipeline to map a set of FastQ files | 661 | |
| down sample NGS data | 604 | |
| reverse complement a set of FastQ files | 588 | |
| A quality control pipeline for illumina data set. This pipeline removes contamin... | 576 | |
| Merge barcoded or non barcoded fastq files generated by Nanopore runs | 543 | |
| SLicer detects splice leader sequences from long-read data using motif detection... | 458 | |
| Pacbio amplicon, sequana, phylogeny, variant | 442 | |
| Multi-sample denovo assembly of FastQ sequences (short read) | 398 | |
| convert files from one format to another using bioconvert | 243 | |
| Run assembler (Canu, Flye, Hifiasm) on a set of long read files | 221 | |
| A pipeline to deplete reads from a given reference | 216 | |
| Snakemake pipeline wrapping sequana_coverage to analyse several samples at the s... | 164 | |
| ChIP-seq pipeline | 135 | |
| Hi-C analysis, snakemake, sequana, container, reproducibility | 112 | |
| Sequanix is a graphical user interface (GUI) that can be used to run Snakemake w... | 97 |
