41 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Static plotting for spatialdata | 45K | |
| Spatial Single Cell Analysis in Python | 43K | |
| SpatialData IO for common techs | 25K | |
| Interactive visualization of spatial omics data | 15K | |
| exprmat: Routines for expression matrices | 15K | |
| Technology-invariant pipeline for spatial omics analysis that scales to millions... | 6K | |
| Efficient data structures and IO for whole slide image analysis | 3K | |
| A package for creating arbitrary spatialdata for testing purposes. | 3K | |
| 3K | ||
| visualize histology images with umap | 3K | |
| Add your description here | 3K | |
| A Python library for analyzing histological annotations alongside spatial transc... | 2K | |
| Python package for hexagonal binning of high-resolution spatial transcriptomic d... | 2K | |
| python3 physicell data output loader. | 2K | |
| A Python package for the identification, characterization and comparison of spat... | 2K | |
| A Python package for the identification, characterization and comparison of spat... | 2K | |
| A modern Python library for converting Mass Spectrometry Imaging (MSI) data into... | 1K | |
| Single-cell spatial omics analysis that makes you happy! | 1K | |
| dummy_package | 1K | |
| Facilitating the use of Deep Visual Proteomics | 912 | |
| scPortrait is a scalable toolkit to generate single-cell representations from ra... | 870 | |
| A toolkit for subcellular analysis of spatial transcriptomics data | 741 | |
| BioTuring SpatialX Connector | 709 | |
| A package to easily use Vitessce to create interactive plots for single-cell dat... | 645 | |
| A GUI for (imaging) mass cyometry analysis predominantly based on the popular St... | 644 | |
| Spatial Glycomics Analysis Toolkit | 613 | |
| A Python toolkit for quantitative and visual quality control of segmentation and... | 529 | |
| GraphCompass: Graph Comparison Tools for Differential Analyses in Spatial System... | 475 | |
| Interactive and integrated analysis of multiplexed tissue microarrays | 393 | |
| Read/write functions to and from spatialdata for Deep Visual Proteomics | 360 | |
| Download and Convert METASPACE datasets to common formats such as AnnData or Spa... | 310 | |
| Visium HD Pre-processing and Utils Package | 309 | |
| Spatial Multiomics Profiler for Spatial Characterization of Tissue Microenvironm... | 297 | |
| Interoperability between SpatialData and the Xenium Explorer | 266 | |
| Multi-Dimensional Visualization (MDV) is an open-source toolkit for analyzing an... | 232 | |
| Spatial omics analysis tools for cell/gene clustering from a standard region | 192 | |
| B cell repertoire analysis and lineage tracking in spatial omics | 191 | |
| Generation of disentangled microenvironment-induced and intrinsic gene expressio... | 159 | |
| Package for the analysis of transcripts outside segmented cells in python | 122 | |
| Use cases for spatial data. | 62 | |
| A Bayesian optimization framework for multimodal registration of highly multiple... | 61 |
