28 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Spot pseudo-Imager on top of histology | 460K | |
| Segmentation tool for biological cells of irregular size and shape in 3D and 2D. | 8K | |
| A napari plugin for drawing PALM RoboSoftware elements using StarDist segmentati... | 4K | |
| Single Cell Extraction and Morphological Analysis of Whole Slide Images | 3K | |
| Common code for the Lenstra lab. | 2K | |
| Multiplexed DNA-FISH data analysis pipeline | 2K | |
| CenFind is a pipeline to automatically score centrioles in cells. | 2K | |
| Napari Hydra Plugin - GUI-based nested object detection | 986 | |
| Object Detection with Star-convex Shapes | 890 | |
| Brainways | 774 | |
| MyoQuant🔬: a tool to automatically quantify pathological features in muscle fibe... | 768 | |
| 763 | ||
| Brainways | 744 | |
| Merge StarDist Masks - additional postprocessing for StarDist | 552 | |
| Fractal tasks for the Opera/Operetta microscope and drug profiling | 485 | |
| Repository for ENACT pipeline for end-to-end analysis of Visium HD data | 444 | |
| FineST: Fine-grained Spatial Transcriptomic | 426 | |
| Comprehensive package for analysis of Optical Pooled Screens (OPS) for biologica... | 385 | |
| Comprehensive spatial transcriptomics analysis library with advanced segmentatio... | 237 | |
| A package for cell segmentation and tracking. | 225 | |
| Stardist Stacked Timepoints | 211 | |
| The Vizgen Post-processing Tool (VPT) enables users to reprocess and refine the ... | 194 | |
| A package to perform advanced microscopy data analysis | 160 | |
| Zarr-enabled segmentation tool for biological cells of irregular size and shape ... | 140 | |
| Cellpose plugin for PartSeg | 124 | |
| napari plugin to interactively train and test a StarDist model | 93 | |
| Framework for Cell & Region Image Segmentation/Classification | 37 | |
| A python package for segmentation of fluorescent nucleus, and measure the area o... | 1 |
