46 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Definitions for a collaborative cryoET annotation tool. | 6K | |
| modular Python packages for cryo-EM and cryo-ET | 4K | |
| Structural heterogeneous cryoEM reconstruction: https://github.com/Gabriel-Ducro... | 2K | |
| Neural networks for cryo-EM reconstruction | 2K | |
| Simulate a 3D scattering potentials from PDB files | 1K | |
| Python tools to run cisTEM programs and code | 1K | |
| Services and configuration for cryo-EM pipelines | 1K | |
| Package to handle Xmipp Metadata and image binary data | 1K | |
| Simple API for automated tilt-series alignment in IMOD | 1K | |
| A cryo-electron microscopy image simulation library for building data analysis i... | 1K | |
| Toolbox for molecular animations in Blender, powered by Geometry Nodes. | 1K | |
| Code to deal with starfiles and mrcs files | 912 | |
| GPU-accelerated template matching for cryo-ET | 898 | |
| CryoSieve: a particle sorting and sieving algorithm for single particle analysis... | 795 | |
| Report the number of particles in each class from RELION | 792 | |
| a tool for using surfaces to explore volumetric data in napari | 737 | |
| Plot the 2D histogram of Euler angles covered by a set of cryo-EM particles | 695 | |
| Automated cleaning of sub-tomogram particle picking data | 661 | |
| Phantom generator | 658 | |
| Plot the class distribution as a function of iteration from a Class2D or Class3D... | 566 | |
| IO hub for Cryo-EM, Cryo-ET and subtomogram averaging data. | 487 | |
| membrane protein localization for cryo-ET | 437 | |
| Segment Organelles from Electron Microscopy Datasets with Segment-Anything 2 | 433 | |
| A small library to support cryoJAX single particle analysis projects | 429 | |
| RECOVAR cryo-EM heterogeneity analysis | 372 | |
| Pipeline for subtracting filaments from cryo-EM micrographs. | 348 | |
| Cryo-EM Supervised Pose Estimation Dataset utilities | 338 | |
| Simple package to convert star files to Dynamo tables. | 323 | |
| Interface the cryo-EM packages warp, dynamo and M | 308 | |
| Napari [gen2] plugin for Cry-EM and Cryo-ET micrograph annotation for particles | 298 | |
| EMPIARReader provides utilities to lazily load data from EMPIAR into a machine-l... | 293 | |
| CarbOn FIlm detector for cryo-EM images | 292 | |
| tomogram visualisation and annotation in napari | 265 | |
| PyTorch replica of WarpLib's data and tilt series model and some functionality | 207 | |
| A Python package for estimating sample thickness in cryo electron tomograms | 202 | |
| 193 | ||
| Visualize 3D template matching results from Warp | 164 | |
| Small wrapper to run AreTomo2's CTF estimation in RELION 5 | 163 | |
| Yet another FREALIGN wrapper | 138 | |
| A tool converting DYNAMO table files(.tbl) to RELION star files(.star) | 132 | |
| Package to evaluate particle distribution with respect to segmented membranes | 131 | |
| cryo-EM micrograph filtering utilizing Fourier space information | 87 | |
| Easymode - a collection of pretrained general networks for segmenting common euk... | 87 | |
| A tool for painting in cellular architecture | 80 | |
| Subtomogram extraction from local files and the CryoET Data Portal. | 77 | |
| Voxelium-apex: a package for cryoEM/cryoET heterogeneity reconstruction analysis... | 61 |
