34 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Python SDK for Atomscale. | 6K | |
| spaCR Spatial phenotype analysis of CRISPR–Cas9 screens (spaCR) | 5K | |
| A python package and graphical user interface to perform single-cell analysis fo... | 3K | |
| Library and GUI for tracking (rod-like) particles on camera images in 2D and 3D | 3K | |
| MicroLive: An Image Processing Toolkit for Quantifying Live-cell Single-Molecule... | 2K | |
| starfish: unified pipelines for image-based transcriptomics | 2K | |
| Single molecule tracking in plugin for Napari | 2K | |
| Deep-learning enabled quantitative image analysis of cell full lifecycles | 2K | |
| PiSCAT is a python-based package with a graphical user interface for performing ... | 1K | |
| Multi-view light sheet microscopy image processing pipeline | 1K | |
| Spatial phenotype analysis of crisp screens (SpaCr) | 1K | |
| A Python package for AI-based comprehensive analysis of sarcomere structure and ... | 958 | |
| A simple plugin to extract precise models of the Point Spread Functions of image... | 817 | |
| Napari widget for BP04 Practical. | 804 | |
| Particle tracking instrumentation and analysis in Python | 672 | |
| DNAsight | 638 | |
| A package to perform particle segmentation and analysis | 577 | |
| Tracking and object-based analysis of clouds | 533 | |
| A framework for the analysis of the dynamics of particle trajectories | 439 | |
| RABiTPy: A package to track the movement of a subject in a video file. | 426 | |
| A collection of Python scripts for iSCAT microscopy data analysis | 274 | |
| A Python package for processing and analyzing single-particle tracking (SPT) dat... | 264 | |
| A small napari plugin for tracking platelets | 243 | |
| 221 | ||
| A software for sarcomere detection and tracking | 214 | |
| Collection of scripts and wrappers around trackpy. | 210 | |
| Software for analysing the data generated with the nanoQNT device. It includes a... | 186 | |
| a toolset to analyze videos of foraging animals. | 185 | |
| A Napari plugin for extracting single molecule sequences from single/multi-chann... | 177 | |
| Tracking tumor nodules in mice CT scans. | 130 | |
| A Napari plugin for extracting time series traces from Single Molecule Localisat... | 130 | |
| Napari plugin to use trackpy particle tracking | 129 | |
| Mycobacteria-optimized microscopy image analysis version 2 (sort of) | 115 | |
| High-level interface for analyzing single-molecule FRET data | 107 |
