26 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Simulate ARGs and genomic sequence data using population genetic models | 84K | |
| Tools for dealing with tree sequences coming to and from SLiM. | 9K | |
| Forward-time simulation in Python using fwdpp | 8K | |
| Infer a tree sequence from genetic variation data. | 5K | |
| Ancestral recombination graph (ARG) data structure and operations | 3K | |
| Gzip-like compression for tskit tree sequences | 3K | |
| Ancestral recombination graph (ARG) | 3K | |
| Infer the age of ancestral nodes in a tree sequence. | 2K | |
| Demographic inference from Ancestral Recombination Graphs. | 1K | |
| A python library with genealogy methods | 1K | |
| Easy-to-use interactive tools for spatiotemporal ancestral recombination graph a... | 989 | |
| Quantitative trait simulation of tree sequence data | 818 | |
| A realistic-ish aDNA simulator | 525 | |
| Visualization and Analysis of Ancestral Recombination Graphs | 363 | |
| ARG inference and analysis utilities for pandemic-scale SARS-CoV-2 data | 298 | |
| Neural net for estimating dispersal distance | 297 | |
| Bayesian inference of population size history from recombining sequence data. | 258 | |
| Inspect tskit format ARGs | 202 | |
| A Python implementation of the "GAIA" R package by Michael Grundler | 181 | |
| Neural network for capturing linkage disequilibrium related features | 168 | |
| A tool to infer node locations and states from tree sequences. | 166 | |
| Demographic inference from the distribution of pairwise segregating sites | 148 | |
| 122 | ||
| Tools for comparing tree sequences. | 105 | |
| Lorax is AI tool assistant to analyze and visualize trees | 85 | |
| Mini implementations of population genetics algorithms | 58 |
