31 dependents
| Package | Description | Downloads/month |
|---|---|---|
| A Python library containing RNA-related bioinformatics functions and classes. | 8K | |
| OmniGenome: A comprehensive toolkit for genome analysis. | 2K | |
| An integrated design engine for RNA origami | 1K | |
| GenET: Genome Editing Toolkit | 1K | |
| Bioinformatic python package. | 1K | |
| Provide RNA and DNA Foundation Model Benchmarks and Applications | 1K | |
| Genome-wide prediction of dsRNA structures | 1K | |
| Web server for U-Probe | 1K | |
| RNA secondary structure prediction tool | 885 | |
| Feature extraction and analysis toolkit for antisense oligonucleotide design. | 706 | |
| This package designs bridgeRNAs targeting a given locus and and provides metrics... | 660 | |
| Endogenous Deep Mutational Scans (EDMS) | 634 | |
| toolkit for analyzing genome editing experiments | 552 | |
| a short python wrapper for the vienna rna package | 540 | |
| jbioseqtools | 503 | |
| RNA virus analysis toolkit | 492 | |
| Uncovering Stem-loop Motifs from RBP Binding Regions | 422 | |
| miRNAProtPred identifies miRNA target sites in DNA, RNA, or protein-derived nucl... | 348 | |
| A DNA aptamer screening tool for mismatch analysis and hairpin detection & drawi... | 346 | |
| A small package to manage biological data. | 266 | |
| Evolve DNA aptamers using RNA folding energy | 239 | |
| Non-Repetitive Parts Calculator - Automated design and discovery of non-repetiti... | 208 | |
| Aptamer sequence analysis utilities | 197 | |
| Codon Optimizer for mRNA Vaccine Design | 197 | |
| RNAMoIP: Integer Programing Framework to predict RNA secondary structure | 187 | |
| siRNAforge - Multi-species gene to siRNA design, off-target prediction, and rank... | 161 | |
| RNA benchmarking tools and utilities. | 133 | |
| Pipeline for primer design | 107 | |
| Draw nucleic acid structures | 99 | |
| Comprehensive prediction of microRNA target repression strength | 82 | |
| A package for generating toehold switches with homology ranking for gene express... | 53 |
