36 dependents
| Package | Description | Downloads/month |
|---|---|---|
| Efficiently read and write sequencing data from Python | 117K | |
| Cutadapt removes adapter sequences from sequencing reads | 75K | |
| Configure workflow/pipeline tests using yaml files. | 58K | |
| A lightweight, high-performance Python library for parsing jsonl files. | 50K | |
| Base OAREPO package freezeing versions of libraries | 38K | |
| Python recommendation toolkit | 13K | |
| Transcriptome mapping in two colors | 13K | |
| Fast sequencing data quality metrics | 7K | |
| Pipeline components for real-time phylodynamic analysis | 6K | |
| Tree Health and Plant Biosecurity Initiative - Phytophthora ITS1 Classifier Tool | 4K | |
| Single Cell Analysis Pipelines | 4K | |
| python utils for genomic variant (WIP) | 4K | |
| Read-based phasing of genomic variants, also called haplotype assembly | 4K | |
| Foli-seq data processing and analysis tools | 4K | |
| Core tools for working with polygenic scores (PGS) and the PGS Catalog | 4K | |
| Rapid & standardized annotation of bacterial genomes, MAGs & plasmids | 3K | |
| A cli tool to analyze ibd sharing for a specific locus for multiple phenotypes | 2K | |
| Estimating time trees from very large phylogenies | 2K | |
| A command-line tool and library to process and analyze sequencing data from Mole... | 2K | |
| A Python library for SeaFlow data | 2K | |
| Literary Language Toolkit: code, models, corpora, and web tools | 1K | |
| CLI tool to run a PheWAS | 1K | |
| A fast FASTQ filter program. | 1K | |
| Parse data and generate plotting scripts based on plotly. | 1K | |
| Rapid & standardized genome annotation using protein structural information | 1K | |
| Ultra-fast 5' and 3' demultiplexer | 916 | |
| CD-HIT cluster parser | 697 | |
| Fork of cutadapt with folitools performance patches (SeedMultiAdapterFilter, pig... | 543 | |
| Splits FASTQ files evenly. | 474 | |
| The findONTime tool runs concurrently with MinION sequencing and merges (at user... | 289 | |
| Single Cell ATAC-Seq Analysis Pipelines | 212 | |
| A python module to process minion fastq files by concatenating reads as they are... | 203 | |
| Targeted Detection and Reconstruction of Plasmids | 178 | |
| Crawler to download data from the Finna OAI-PMH API | 78 | |
| Single-Cell/Bulk VDJ Analysis Pipelines | 65 | |
| MATSim Agent-Based Transportation Simulation Framework - official python analysi... | 49 |
